Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EIP93_RS02570 Genome accession   NZ_CP034276
Coordinates   558721..560103 (-) Length   460 a.a.
NCBI ID   WP_103861509.1    Uniprot ID   -
Organism   Pectobacterium versatile strain 14A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553721..565103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIP93_RS02540 (EIP93_02540) pepP 553897..555222 (-) 1326 WP_116362619.1 Xaa-Pro aminopeptidase -
  EIP93_RS02545 (EIP93_02545) - 555297..555884 (-) 588 WP_103861511.1 YecA family protein -
  EIP93_RS02550 (EIP93_02550) zapA 556077..556406 (+) 330 WP_010284667.1 cell division protein ZapA -
  EIP93_RS02560 (EIP93_02560) - 556704..557351 (+) 648 WP_107333682.1 5-formyltetrahydrofolate cyclo-ligase -
  EIP93_RS02565 (EIP93_02565) nadR 557348..558601 (-) 1254 WP_107332255.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  EIP93_RS02570 (EIP93_02570) radA 558721..560103 (-) 1383 WP_103861509.1 DNA repair protein RadA Machinery gene
  EIP93_RS02575 (EIP93_02575) serB 560121..561098 (-) 978 WP_107332256.1 phosphoserine phosphatase -
  EIP93_RS02580 (EIP93_02580) - 561255..561953 (+) 699 WP_010296287.1 YtjB family periplasmic protein -
  EIP93_RS02585 (EIP93_02585) - 562002..562910 (-) 909 WP_125232236.1 hypothetical protein -
  EIP93_RS02590 (EIP93_02590) prfC 563204..564793 (+) 1590 WP_039481772.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49614.22 Da        Isoelectric Point: 7.4463

>NTDB_id=330334 EIP93_RS02570 WP_103861509.1 558721..560103(-) (radA) [Pectobacterium versatile strain 14A]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLVSASVSRSDRLTGYAGESAGISRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=330334 EIP93_RS02570 WP_103861509.1 558721..560103(-) (radA) [Pectobacterium versatile strain 14A]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGCAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGTCTCGGCGTCTGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCATCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCCGGCAGCGCCATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTGCTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTATGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCGCACAGACTCAATCTGCCGACGCAGAACCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCTCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTTCTCAGCCGTGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTAGATCAA
TCGATGATGGCCAATCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTAGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTATTCGGCGTGAAAAAGCTAGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus mitis NCTC 12261

42.857

98.913

0.424
  radA Streptococcus pneumoniae Rx1

42.857

98.913

0.424
  radA Streptococcus pneumoniae D39

42.857

98.913

0.424
  radA Streptococcus pneumoniae R6

42.857

98.913

0.424
  radA Streptococcus pneumoniae TIGR4

42.857

98.913

0.424
  radA Streptococcus mitis SK321

42.857

98.913

0.424

Multiple sequence alignment