Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EIY89_RS19340 Genome accession   NZ_CP034246
Coordinates   4357091..4358611 (+) Length   506 a.a.
NCBI ID   WP_190533671.1    Uniprot ID   -
Organism   Shewanella algae strain VGH117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4352091..4363611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIY89_RS19315 (EIY89_19345) - 4352952..4353950 (-) 999 WP_181316405.1 ABC transporter substrate-binding protein -
  EIY89_RS19320 (EIY89_19350) - 4354110..4354358 (-) 249 WP_107006340.1 hypothetical protein -
  EIY89_RS19325 (EIY89_19355) - 4354514..4355329 (-) 816 WP_025889655.1 EAL domain-containing protein -
  EIY89_RS19330 (EIY89_19360) - 4355648..4356445 (+) 798 WP_107006342.1 winged helix-turn-helix domain-containing protein -
  EIY89_RS19335 (EIY89_19365) - 4356433..4356933 (+) 501 WP_025010079.1 hypothetical protein -
  EIY89_RS19340 (EIY89_19370) comM 4357091..4358611 (+) 1521 WP_190533671.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EIY89_RS19345 (EIY89_19375) - 4358711..4359607 (+) 897 WP_096142469.1 LysR substrate-binding domain-containing protein -
  EIY89_RS19350 (EIY89_19380) phnX 4359710..4360519 (-) 810 WP_190533673.1 phosphonoacetaldehyde hydrolase -
  EIY89_RS19355 (EIY89_19385) - 4360507..4361634 (-) 1128 WP_190533678.1 phosphonoacetaldehyde reductase -
  EIY89_RS19360 (EIY89_19390) phnE 4361653..4362456 (-) 804 WP_045283250.1 phosphonate ABC transporter, permease protein PhnE -
  EIY89_RS19365 (EIY89_19395) phnC 4362450..4363277 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54441.90 Da        Isoelectric Point: 8.7098

>NTDB_id=330205 EIY89_RS19340 WP_190533671.1 4357091..4358611(+) (comM) [Shewanella algae strain VGH117]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFIEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=330205 EIY89_RS19340 WP_190533671.1 4357091..4358611(+) (comM) [Shewanella algae strain VGH117]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
TGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTAATTATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACTCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCGCACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCCGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACTTCAGAGGCG
GCGCAAGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTATCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.621

100

0.557
  comM Haemophilus influenzae Rd KW20

54.688

100

0.553
  comM Vibrio campbellii strain DS40M4

55.03

100

0.551
  comM Glaesserella parasuis strain SC1401

54.635

100

0.547
  comM Legionella pneumophila str. Paris

47.695

98.617

0.47
  comM Legionella pneumophila strain ERS1305867

47.695

98.617

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435

Multiple sequence alignment