Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   NAMH_RS09430 Genome accession   NC_012115
Coordinates   248872..248997 (-) Length   41 a.a.
NCBI ID   WP_015902411.1    Uniprot ID   -
Organism   Nautilia profundicola AmH     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 243872..253997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAMH_RS01395 (NAMH_0281) - 244280..244465 (+) 186 WP_012663870.1 hypothetical protein -
  NAMH_RS01400 (NAMH_0282) - 244632..245219 (+) 588 WP_015902206.1 uracil-DNA glycosylase -
  NAMH_RS01405 (NAMH_0283) - 245280..245570 (+) 291 WP_015902103.1 hypothetical protein -
  NAMH_RS01410 (NAMH_0284) - 245571..246086 (-) 516 WP_012663593.1 formyltransferase family protein -
  NAMH_RS01415 (NAMH_0285) - 246201..248264 (+) 2064 WP_015902262.1 hypothetical protein -
  NAMH_RS01425 (NAMH_0287) - 248535..248888 (-) 354 WP_015902326.1 hypothetical protein -
  NAMH_RS09430 (NAMH_0288) ctsG 248872..248997 (-) 126 WP_015902411.1 type II secretion system protein Machinery gene
  NAMH_RS01430 (NAMH_0289) murD 248994..250172 (-) 1179 WP_012664013.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  NAMH_RS01435 (NAMH_0290) sppA 250169..251071 (-) 903 WP_015902712.1 signal peptide peptidase SppA -
  NAMH_RS01440 (NAMH_0291) mraY 251080..252135 (-) 1056 WP_015901909.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  NAMH_RS01445 (NAMH_0292) fabG 252203..252946 (+) 744 WP_015901892.1 3-oxoacyl-ACP reductase FabG -
  NAMH_RS01450 (NAMH_0293) acpP 253008..253241 (+) 234 WP_015902737.1 acyl carrier protein -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4768.91 Da        Isoelectric Point: 10.2879

>NTDB_id=33012 NAMH_RS09430 WP_015902411.1 248872..248997(-) (ctsG) [Nautilia profundicola AmH]
MKKSFTLLELLFVIVIIGILSAVVTVKFFSFKTKKFCDIYH

Nucleotide


Download         Length: 126 bp        

>NTDB_id=33012 NAMH_RS09430 WP_015902411.1 248872..248997(-) (ctsG) [Nautilia profundicola AmH]
ATGAAAAAATCATTTACGTTATTAGAATTATTGTTTGTTATTGTTATTATTGGAATTTTATCAGCCGTTGTAACTGTAAA
ATTTTTTTCATTTAAAACAAAGAAGTTTTGTGATATCTATCATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

58.824

82.927

0.488
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50

78.049

0.39

Multiple sequence alignment