Detailed information NTG0033011

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMF_RS35145
• Genome accession: NC_014551
• Coordinates: 2935442..2936572 (-)
• Length: 376 a.a.
• NCBI ID: WP_013353308.1
• Uniprot ID: A0A9P1JJI8
• Organism: Bacillus amyloliquefaciens DSM 7 = ATCC 23350
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2930442..2941572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMF_RS35115 (BAMF_2875)	-	2930657..2931325 (+)	669	WP_013353302.1	potassium channel family protein	-
BAMF_RS35120 (BAMF_2876)	-	2931349..2932194 (-)	846	WP_013353303.1	glucosaminidase domain-containing protein	-
BAMF_RS35125 (BAMF_2877)	hmpA	2932334..2933509 (-)	1176	WP_013353304.1	NO-inducible flavohemoprotein	-
BAMF_RS35130	-	2933726..2934366 (+)	641	Protein_2953	cupin domain-containing protein	-
BAMF_RS35135 (BAMF_2879)	-	2934426..2934749 (-)	324	WP_013353306.1	hypothetical protein	-
BAMF_RS35145 (BAMF_2881)	rapC	2935442..2936572 (-)	1131	WP_013353308.1	tetratricopeptide repeat protein	Regulator
BAMF_RS35150	-	2936960..2937163 (+)	204	WP_014470862.1	hypothetical protein	-
BAMF_RS35160 (BAMF_2883)	-	2939856..2940251 (-)	396	WP_013353310.1	hypothetical protein	-
BAMF_RS35165 (BAMF_2884)	-	2940241..2940654 (-)	414	WP_013353311.1	hypothetical protein	-
BAMF_RS35170	-	2940840..2941064 (+)	225	WP_014470866.1	helix-turn-helix domain-containing protein	-
BAMF_RS35175 (BAMF_2885)	-	2941187..2941489 (+)	303	WP_014470867.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44372.86 Da
• Isoelectric Point: 6.5099

>NTDB_id=33011 BAMF_RS35145 WP_013353308.1 2935442..2936572(-) (rapC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MSPVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYSLMKFRHQLMLDYLEPVTVRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLIHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYIYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=33011 BAMF_RS35145 WP_013353308.1 2935442..2936572(-) (rapC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
GTGAGTCCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAGATAAACGAGATGGAAGAAGACGAGTATTTACTAATATATTATT
CTCTCATGAAATTCCGCCATCAACTCATGCTTGATTATTTAGAGCCGGTAACTGTCAGAGTCCGACCGACAATCGACGAG
TTGCTGGAAAAAATCGAAGCATCAAATAAAGGCATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTTCGCGGCATGTA
TGAATTTGATCAGAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCATTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTGTTCGTCATATCTGG
GAATTATGTTGACTTTAAACGTTATGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATTTCTGAAAAGTATAAATTGGGCAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAAGGACTTTCATCAGCTATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATACATTAACGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCATATATTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

3D structure

• AlphaFold DB: A0A9P1JJI8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.633	100	0.41