Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   EIJ81_RS14765 Genome accession   NZ_CP034240
Coordinates   2682619..2686002 (+) Length   1127 a.a.
NCBI ID   WP_012551045.1    Uniprot ID   B6EL07
Organism   Aliivibrio salmonicida strain VS224     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2677619..2691002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIJ81_RS14745 (EIJ81_14745) erpA 2678091..2678432 (-) 342 WP_012551041.1 iron-sulfur cluster insertion protein ErpA -
  EIJ81_RS14750 (EIJ81_14750) hemL 2678668..2679963 (+) 1296 WP_012551042.1 glutamate-1-semialdehyde 2,1-aminomutase -
  EIJ81_RS14755 (EIJ81_14755) - 2680223..2681308 (+) 1086 WP_012551043.1 AI-2E family transporter -
  EIJ81_RS14760 (EIJ81_14760) rsmC 2681435..2682454 (+) 1020 WP_044583325.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  EIJ81_RS14765 (EIJ81_14765) chiS 2682619..2686002 (+) 3384 WP_012551045.1 response regulator Regulator
  EIJ81_RS14770 (EIJ81_14770) - 2686616..2688261 (+) 1646 Protein_2571 ABC transporter substrate-binding protein -
  EIJ81_RS14775 (EIJ81_14775) - 2688408..2689394 (+) 987 WP_012551046.1 ABC transporter permease -
  EIJ81_RS14780 (EIJ81_14780) - 2689397..2690422 (+) 1026 WP_012551047.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1127 a.a.        Molecular weight: 126471.60 Da        Isoelectric Point: 6.2987

>NTDB_id=330069 EIJ81_RS14765 WP_012551045.1 2682619..2686002(+) (chiS) [Aliivibrio salmonicida strain VS224]
MDKKQHFKRLQNTLMIAFLVLSITPLSVIAIFFLHSHSQDLATQSTAHLVSLRDNKEQQVSNYVKARKSEVLGFARSELA
NASGGRFYGLISAFPRLGNTIEDARSNAQIRYIGGSGNKIRTSILPESDSYIGSERYSLLHKRYHWAYLELLKRSDFTDI
LLVDIDGNVVYSQKKEDNYGTNLITGKYHDTPLGKTYSKIRSMMEKPENKDDIPVVFSDFSIMNGENVSWFAAPIVQQGY
LHSFVLFKLPNNGLSLLLKNGQQDSSSIKSYLVGDNSLSLISGISTDKNTSENIIQALSGKTDVGSFTDKSNNSVLSAFT
VVHIDDKVWGLSVELPEKEAFSRIKQLEQIFVIAMILAIVCVVIASHFLSNSITAPLLRLTWVAERLSAGDLDQKMISTD
RKDEIGRLAVSFARMQRSIREKIQLIKAQNEELETNLSIIQHKNQELEAADKLKDEFLATTSHELRTPLHGMVGIAEALY
TGANGPISASHRHQLEIIINSGQRLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQVDK
SLPSVYADEQRLEQVLYNLIGNAIKYTSEGKIVISASVVDQFLRVQVVDTGHGIPADELEHIFEPLIQAGHDSNRYRQGS
GLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLPLASKDQIQQHKSLTKEDIAHYQTPEKLEYNLDDLDETQPENPNGP
LLLVADDEPVNLQVLSSFLKLEGYRVKTANDGPETLKQLEEETPELVLLDVMMPGMSGYEVCQEVRKQYSHSQLPIIMLT
ALNQTQDRVRGFESGANDYLSKPFNKQELAARIKAHLQASQAEIRLTENDRLQQEIRHREKVEASLLETQTHILGQLNHA
QEAIICAKSDGKIQYVNHAAAKLFLRTEEQLSRYSIDELIAKRSLIEGDKHHRGNIDVYIDGSIEQINADLVHLPPASGL
SLMLIVSHKNEASEQRIYDLESAVEALSAFAFEGDKQKLNSLSSIGGDIAQLAIKANENKEDKGTIMRELIVDGMISALS
YWEESTGHSKFTLAEESGLWRVYLDRSTLQTRTLDKYLRVESLPKTPRWRTVVSTLEYILEHCNEHNQDREKLIRIKDKL
QILISSN

Nucleotide


Download         Length: 3384 bp        

>NTDB_id=330069 EIJ81_RS14765 WP_012551045.1 2682619..2686002(+) (chiS) [Aliivibrio salmonicida strain VS224]
ATGGATAAAAAACAACACTTTAAACGTCTTCAAAATACGTTAATGATTGCATTTCTTGTTTTAAGTATTACTCCTCTTTC
TGTTATTGCTATATTTTTTCTACACTCACATAGCCAAGATCTCGCAACTCAAAGTACGGCGCATCTTGTTTCATTAAGAG
ACAATAAAGAGCAGCAAGTAAGTAACTACGTCAAAGCTCGTAAATCAGAAGTGCTTGGCTTTGCTCGTTCCGAGTTAGCT
AATGCTAGTGGTGGGCGTTTCTATGGTTTAATTAGTGCCTTTCCTCGTCTTGGTAATACGATTGAAGATGCGAGGAGCAA
TGCTCAAATTCGATACATTGGCGGCTCTGGTAATAAAATACGAACCAGTATTCTTCCTGAATCCGATTCTTATATTGGCA
GTGAACGCTATAGTCTACTTCATAAACGATACCACTGGGCATACCTTGAATTATTAAAGCGATCTGATTTCACTGACATT
CTTTTAGTCGATATCGATGGTAATGTCGTTTATTCCCAGAAAAAAGAAGATAACTACGGTACTAATTTAATTACGGGAAA
ATACCACGACACACCACTTGGAAAAACCTACAGTAAAATTCGGTCTATGATGGAAAAACCAGAAAATAAAGACGATATTC
CTGTCGTATTTTCTGACTTTTCTATTATGAATGGAGAAAATGTCTCTTGGTTTGCGGCACCAATTGTACAGCAAGGTTAT
TTGCACAGCTTCGTCTTGTTTAAACTGCCAAACAACGGTCTAAGCCTACTATTAAAAAATGGACAACAAGATTCATCATC
GATAAAAAGCTATCTTGTTGGTGATAATTCTCTTTCTTTAATTAGTGGTATCAGTACCGATAAAAATACGTCTGAAAATA
TTATTCAAGCATTAAGCGGGAAAACTGACGTAGGTAGCTTTACTGATAAAAGTAATAATAGTGTACTTTCTGCTTTTACC
GTGGTTCACATTGATGACAAAGTATGGGGACTCTCTGTTGAATTACCAGAAAAAGAAGCCTTCTCTCGTATCAAACAATT
AGAACAAATTTTTGTTATCGCGATGATCTTAGCCATTGTGTGTGTTGTTATTGCTTCCCATTTCTTATCAAATTCAATTA
CTGCACCTTTATTGAGGTTAACGTGGGTAGCAGAGAGACTCTCGGCAGGCGATCTCGATCAAAAAATGATCAGCACCGAT
CGAAAAGATGAAATAGGACGATTAGCAGTCAGCTTTGCACGTATGCAGCGATCTATTCGTGAAAAAATTCAATTAATCAA
AGCTCAAAATGAAGAATTAGAAACAAACCTTTCTATTATTCAACATAAAAACCAAGAATTAGAAGCGGCTGATAAACTCA
AAGATGAATTCCTAGCCACCACATCTCATGAATTAAGAACACCATTACACGGTATGGTCGGTATTGCTGAAGCCCTTTAT
ACCGGGGCTAATGGTCCAATCTCCGCTTCTCATCGTCATCAATTAGAAATTATAATTAATAGTGGCCAGCGCCTAACCAA
CTTAGTGAATGATCTTTTGGATTACCACAAAATGCGTCACGGCAATCTGGATATAAATCGCCACGTTGCCGACTTATCAT
CGGCAACAAGTTTGGTTTTAGAGTTATCGCATCATTTGCTGGGCAACAAACCAATAAGAATAATCAATCAAGTAGATAAG
TCTTTACCTTCTGTCTATGCTGATGAACAACGATTAGAACAAGTACTTTATAATTTAATCGGTAATGCGATTAAATATAC
TTCAGAAGGAAAAATTGTTATTTCAGCAAGTGTTGTCGATCAATTCTTACGAGTTCAAGTTGTCGATACTGGTCATGGTA
TTCCTGCTGATGAATTAGAGCATATTTTTGAACCCTTAATTCAAGCAGGGCATGATTCTAATCGCTATCGCCAAGGATCA
GGGCTTGGTTTGTCAATCAGTCGTCAATTAATAGAATTAATGGGTGGATCGCTGTACGTAAGCAGCCAACCAATGGTTGG
CGCGACCTTTAGCTTTACTTTACCTTTAGCATCTAAAGATCAAATTCAACAACATAAATCCCTAACAAAAGAAGATATTG
CTCATTATCAAACACCAGAAAAACTAGAATATAACTTAGACGATTTAGATGAAACTCAACCAGAAAATCCGAATGGTCCT
TTACTTCTTGTTGCTGATGATGAGCCCGTTAATTTACAAGTGTTAAGTAGTTTCTTAAAACTGGAAGGCTATCGCGTAAA
AACGGCCAATGATGGCCCTGAGACATTAAAACAGTTAGAAGAAGAAACCCCTGAATTAGTGCTACTAGATGTCATGATGC
CAGGAATGAGTGGATATGAGGTATGCCAAGAGGTCAGAAAGCAATATAGCCACTCTCAATTGCCTATTATCATGCTCACG
GCTTTAAACCAAACTCAAGATAGAGTGAGAGGTTTTGAATCAGGTGCTAATGACTATTTGAGTAAACCATTTAATAAACA
AGAGCTGGCGGCAAGGATAAAAGCACATTTACAAGCAAGCCAAGCAGAAATAAGGCTAACAGAGAATGATCGCTTACAAC
AAGAGATCCGACATAGAGAAAAAGTAGAAGCCAGTTTATTAGAAACACAAACTCATATCTTAGGGCAACTAAACCATGCC
CAAGAAGCCATTATTTGTGCTAAATCTGACGGTAAAATTCAATATGTTAACCATGCAGCAGCAAAACTTTTTTTACGTAC
AGAAGAGCAATTGTCACGATATTCAATTGATGAGTTAATTGCTAAACGCAGCTTAATTGAGGGTGATAAACATCATAGAG
GTAATATCGATGTCTATATTGATGGTTCTATTGAACAAATTAATGCTGACTTAGTACACCTACCTCCCGCATCAGGCTTA
TCTCTAATGCTTATTGTTAGTCATAAAAATGAAGCCAGTGAGCAGCGTATATATGATTTAGAAAGCGCGGTAGAAGCATT
GTCTGCGTTTGCTTTCGAAGGAGATAAGCAAAAGCTTAACTCTTTGTCTTCTATTGGTGGTGACATTGCACAATTGGCAA
TTAAAGCGAATGAAAATAAAGAAGATAAGGGAACAATTATGCGAGAACTCATTGTTGATGGCATGATATCTGCCCTATCT
TATTGGGAAGAATCTACTGGGCATTCAAAGTTTACACTCGCAGAAGAAAGTGGATTATGGCGCGTATATCTTGATAGAAG
CACATTGCAAACTCGTACGCTAGATAAGTATTTACGAGTTGAGTCTCTCCCTAAAACACCACGTTGGCGAACGGTAGTCA
GTACATTGGAATATATTCTAGAACATTGTAACGAACATAACCAAGACAGAGAGAAGCTCATAAGAATAAAAGATAAGCTT
CAAATTCTTATTTCATCAAATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(568-677)

HAMP domain (HAMP)

(368-421)

Response regulator receiver domain (Response_reg)

(723-834)

His Kinase A (phospho-acceptor) domain (HisKA)

(454-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6EL07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

63.475

100

0.635

Multiple sequence alignment