Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EEI45_RS03620 Genome accession   NZ_CP034234
Coordinates   741119..742918 (+) Length   599 a.a.
NCBI ID   WP_125164180.1    Uniprot ID   A0A3Q8S2L1
Organism   Erysipelothrix piscisicarius strain 15TAL0474     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 736119..747918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEI45_RS03565 (EEI45_03580) gatB 736210..737625 (+) 1416 WP_125164178.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  EEI45_RS03570 (EEI45_03585) - 737664..738335 (+) 672 WP_125164179.1 hypothetical protein -
  EEI45_RS09110 - 738425..739060 (+) 636 WP_228410521.1 hypothetical protein -
  EEI45_RS09115 - 739057..739632 (+) 576 WP_228410522.1 O-antigen ligase -
  EEI45_RS03620 (EEI45_03635) pepF 741119..742918 (+) 1800 WP_125164180.1 oligoendopeptidase F Regulator
  EEI45_RS03625 (EEI45_03640) - 742974..743366 (-) 393 WP_125164181.1 CoA-binding protein -
  EEI45_RS03630 (EEI45_03645) - 743363..743965 (-) 603 WP_125164182.1 alpha/beta hydrolase -
  EEI45_RS09120 - 744036..744893 (-) 858 WP_228410523.1 PTS sugar transporter subunit IIA -
  EEI45_RS09125 - 744853..745899 (-) 1047 WP_228410524.1 helix-turn-helix domain-containing protein -
  EEI45_RS03640 (EEI45_03655) - 745966..746784 (-) 819 WP_125164183.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  EEI45_RS03645 (EEI45_03660) - 746777..747547 (-) 771 WP_125164184.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68655.50 Da        Isoelectric Point: 4.4238

>NTDB_id=329971 EEI45_RS03620 WP_125164180.1 741119..742918(+) (pepF) [Erysipelothrix piscisicarius strain 15TAL0474]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNAEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADEAVIREYLESNEALTLYHHEFDRLFKSRPHILSEKEER
ILASSGEIFGVSSQTFGMLNNADIQFPTIKDESGNDIQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNIDLLHDYVALREDALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFNERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTTDYLIESYYKLNQFYYGESISTQEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDKTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=329971 EEI45_RS03620 WP_125164180.1 741119..742918(+) (pepF) [Erysipelothrix piscisicarius strain 15TAL0474]
ATGTCGGATAAATATGAATTACCACTTCGAAGTGAAGTGGATATAAAAGATACATGGGATTTAACCCCTATGTTTAAAGA
TGATGACGCATGGAATGCAGAGTTTGATGCGATTCAAAACGACTTAAGTGAAGTGGCTGCATATCGCGGTACACTCACCA
AGAGCGCAGAGAGTTTATTAGCGGGTCTTAAATTTCGTGATGAATTAAGTTATCGTATTGAATTTTTATATGTTTATGCA
CATCTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCAATGAATGCACGCGTACAATCGCTTCTTGCGCAATT
TGGATCAAGTTTTTCTTTCTATGAAGCAGAAATTTTATCTGCAGATGAGGCGGTTATTCGCGAATATCTTGAATCAAATG
AGGCACTCACTTTATATCATCACGAGTTTGATCGTCTTTTTAAATCAAGACCTCATATTCTTAGCGAGAAGGAAGAGCGT
ATTCTCGCATCATCAGGCGAAATCTTTGGCGTTTCTTCGCAAACATTTGGTATGTTAAATAATGCGGATATTCAATTCCC
TACAATTAAAGATGAATCAGGAAATGATATTCAATTATCACACGGACGTTATTCACTCTTAATGGAGAGTGCGGATCGTC
GAGTTCGTGAAGATGCTTTTAAAGCAATGCAAACAACGTATGGTAATTTAAAGAATACACTTGCAAGTACTTTATCAGGA
AATGTAAAGGTTCATAATTTCAATGCAACGATTCGTAATTATGCATCAGCACGTCAAGCTGCACTTGCTGCAAATAATAT
TGACGAAGAAGTTTATGACTCACTTCTCGAAGGAATTCATAATAATATTGATTTACTTCATGATTATGTTGCACTTCGTG
AAGATGCATTGGGTATTGATGATATTCAAATGTATGATATCTATGTCCCAATGGTTGATGAAGTGGATTTAAAATTTACG
TATGAAGAAGCACAAGAAGTAATTTTGGATGCCTTGAGTGTTCTGGGTGAAGAATATTGTGCAGTATTAAAACGTGCATT
TAATGAACGTTGGATTGATGTTGTTGAGAATAAAGGGAAGCGATCGGGTGCTTATTCATCAGGTACTTATGGAAGTGCCC
CTTATATTCTGTTAAACTGGCAAGAAAATATAGATAATGTCTTTACACTTGCTCATGAACTCGGCCACAGTGTTCACTCT
TACTTTACACGTAAGTATCAACCTTACATTTATGGTGATTACTCGATTTTTGTTGCTGAAGTTGCTTCAACGACAAATGA
AAATTTATTGTTGAATTACTTATTGGATCAATATGAGGATCCTAAGGTTCGTGCTTACCTGTTGAATCATTATTTAGACA
CGGTTAAAGGCACGGTGTTCCGTCAAACGCAGTTTGCTGAGTTTGAACACCTTATCCATAAATCAGACCAGGAGGGCGTT
GCTTTAACGACTGATTATCTCATTGAGTCGTACTACAAACTGAATCAATTCTATTATGGTGAATCGATCAGTACCCAAGA
AATTGGTTATGAGTGGGCACGGATCCCTCATTTCTACTACAACTATTATGTTTACCAATATGCTACAGGATTTAGTGCGG
CAACTTTATTCAGTGAAACAATTTATAATGGTGGCGATGCGACACCTTATCTTGACTTCTTAAAATCGGGAAGTTCTGAT
TATCCTATCAATGTCCTACGAAAAGCAGGTGTTGATATGACAGAATCAACAGCTGTTGATAAAACACTGGAAAAATTTGG
TGAACGTATGGCGGAATTACGAACACTGCTTGTAAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(206-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q8S2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.735

98.998

0.482

Multiple sequence alignment