Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   FP480_RS10565 Genome accession   NZ_CP042003
Coordinates   2113193..2113906 (+) Length   237 a.a.
NCBI ID   WP_001031455.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B3-14B     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2108193..2118906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP480_RS10505 (FP480_10505) - 2108296..2108934 (-) 639 WP_001043061.1 ERF family protein -
  FP480_RS10510 (FP480_10510) - 2108934..2109413 (-) 480 WP_000002513.1 siphovirus Gp157 family protein -
  FP480_RS10515 (FP480_10515) - 2109406..2109642 (-) 237 WP_000802315.1 hypothetical protein -
  FP480_RS10520 (FP480_10520) - 2109650..2109910 (-) 261 WP_000291075.1 DUF1108 family protein -
  FP480_RS10525 (FP480_10525) - 2110004..2110165 (-) 162 WP_000048127.1 DUF1270 family protein -
  FP480_RS10530 (FP480_10530) - 2110158..2110379 (-) 222 WP_000594794.1 hypothetical protein -
  FP480_RS14900 - 2110450..2110620 (+) 171 WP_000224747.1 hypothetical protein -
  FP480_RS10535 (FP480_10535) - 2110632..2110922 (-) 291 WP_000405222.1 hypothetical protein -
  FP480_RS10540 (FP480_10540) - 2110963..2111715 (-) 753 WP_001148607.1 phage antirepressor KilAC domain-containing protein -
  FP480_RS10545 (FP480_10545) - 2111717..2111902 (-) 186 WP_000933364.1 helix-turn-helix domain-containing protein -
  FP480_RS10550 (FP480_10550) - 2112346..2112609 (+) 264 WP_014533247.1 CRISPR-associated protein Cas2 -
  FP480_RS14905 - 2112614..2112775 (-) 162 WP_172972928.1 hypothetical protein -
  FP480_RS10555 (FP480_10555) - 2112791..2113060 (-) 270 WP_145411564.1 helix-turn-helix transcriptional regulator -
  FP480_RS10560 (FP480_10560) - 2113057..2113230 (-) 174 Protein_2025 transcriptional regulator -
  FP480_RS10565 (FP480_10565) irvR 2113193..2113906 (+) 714 WP_001031455.1 S24 family peptidase Regulator
  FP480_RS14910 - 2113918..2114064 (+) 147 WP_001049401.1 hypothetical protein -
  FP480_RS10570 (FP480_10570) - 2114061..2114246 (+) 186 WP_031794897.1 hypothetical protein -
  FP480_RS10575 (FP480_10575) - 2114338..2115996 (+) 1659 WP_017431789.1 DpnII family type II restriction endonuclease -
  FP480_RS10580 (FP480_10580) - 2116057..2117106 (+) 1050 WP_001145731.1 tyrosine-type recombinase/integrase -
  FP480_RS10585 (FP480_10585) sufB 2117174..2118571 (-) 1398 WP_001074405.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26972.55 Da        Isoelectric Point: 6.4997

>NTDB_id=329960 FP480_RS10565 WP_001031455.1 2113193..2113906(+) (irvR) [Staphylococcus aureus strain B3-14B]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKV
NGDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=329960 FP480_RS10565 WP_001031455.1 2113193..2113906(+) (irvR) [Staphylococcus aureus strain B3-14B]
ATGAACAAAGAAAGAAATATTATCATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCACAAAAGAAACT
TGCCGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGGGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGTGACATAGATACAACCTACAAAGACGATAACGATATCACTTCCATA
TACAGTAAACTCACACCTCCACGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAG
TGATAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCAGCTGGTATTG
GCGAAAGATTATATAACGAGCCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTA
AATGGAGATTCAATGGAGCCGTTATTTAAAAACGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACA
AATAGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAAGTTTATGTAGAAGATAATAGATTAACGTTGGTTTCTT
TAAATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(125-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.569

100

0.401