Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | CLA_RS06115 | Genome accession | NC_012039 |
| Coordinates | 1180872..1181786 (-) | Length | 304 a.a. |
| NCBI ID | WP_012661930.1 | Uniprot ID | - |
| Organism | Campylobacter lari RM2100 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1175052..1205456 | 1180872..1181786 | within | 0 |
Gene organization within MGE regions
Location: 1175052..1205456
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLA_RS06085 (CLA1603) | - | 1175052..1176209 (+) | 1158 | WP_012661924.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| CLA_RS06090 (CLA1604) | mgtE | 1176211..1177554 (+) | 1344 | WP_012661925.1 | magnesium transporter | - |
| CLA_RS06095 (CLA1605) | tpx | 1177566..1178084 (+) | 519 | WP_012661926.1 | thiol peroxidase | - |
| CLA_RS06100 (CLA1606) | - | 1178081..1179466 (-) | 1386 | WP_012661927.1 | replicative DNA helicase | - |
| CLA_RS06105 (CLA1607) | cysK | 1179479..1180381 (-) | 903 | WP_012661928.1 | cysteine synthase A | - |
| CLA_RS06110 (CLA_1225) | - | 1180477..1180779 (-) | 303 | WP_012661929.1 | HU family DNA-binding protein | - |
| CLA_RS06115 (CLA0462) | waaF | 1180872..1181786 (-) | 915 | WP_012661930.1 | glycosyltransferase family 9 protein | Regulator |
| CLA_RS06120 (CLA0461) | - | 1181835..1182647 (+) | 813 | WP_012661931.1 | glycosyltransferase family 2 protein | - |
| CLA_RS06125 (CLA0460) | - | 1182642..1183406 (-) | 765 | WP_012661932.1 | oxidoreductase | - |
| CLA_RS06130 (CLA0459) | - | 1183406..1184113 (-) | 708 | WP_012661933.1 | acylneuraminate cytidylyltransferase family protein | - |
| CLA_RS06135 (CLA0458) | - | 1184106..1184996 (-) | 891 | WP_012661934.1 | Gfo/Idh/MocA family oxidoreductase | - |
| CLA_RS06140 (CLA0457) | - | 1184993..1186030 (-) | 1038 | WP_012661935.1 | nucleotidyltransferase family protein | - |
| CLA_RS06145 (CLA0456) | - | 1186041..1186712 (-) | 672 | WP_012661936.1 | PIG-L deacetylase family protein | - |
| CLA_RS06150 (CLA0455) | - | 1186722..1187615 (-) | 894 | WP_012661937.1 | formyltransferase family protein | - |
| CLA_RS06155 (CLA0454) | neuC | 1187612..1188784 (-) | 1173 | WP_012661938.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| CLA_RS06160 (CLA0453) | neuB | 1188777..1189781 (-) | 1005 | WP_012661939.1 | N-acetylneuraminate synthase | - |
| CLA_RS06165 (CLA0452) | - | 1189797..1190687 (-) | 891 | WP_012661940.1 | methionyl-tRNA formyltransferase | - |
| CLA_RS06170 (CLA0451) | - | 1190724..1191731 (-) | 1008 | WP_012661941.1 | NAD-dependent 4,6-dehydratase LegB | - |
| CLA_RS08385 | - | 1191834..1192088 (+) | 255 | WP_193328950.1 | class I SAM-dependent methyltransferase | - |
| CLA_RS08390 | - | 1192178..1192636 (+) | 459 | WP_193328951.1 | hypothetical protein | - |
| CLA_RS06185 (CLA0449) | - | 1192633..1192843 (+) | 211 | Protein_1215 | glycosyltransferase family 2 protein | - |
| CLA_RS06190 (CLA0448) | - | 1192930..1194135 (+) | 1206 | WP_012661943.1 | glycosyltransferase family 2 protein | - |
| CLA_RS06195 (CLA0447) | - | 1194139..1195059 (+) | 921 | WP_012661944.1 | glycosyltransferase family 2 protein | - |
| CLA_RS06200 (CLA0446) | - | 1195049..1196218 (-) | 1170 | WP_012661945.1 | glycosyltransferase family 2 protein | - |
| CLA_RS06205 (CLA0445) | - | 1196278..1197273 (+) | 996 | WP_012661946.1 | capsular polysaccharide synthesis protein | - |
| CLA_RS06210 (CLA0444) | - | 1197257..1198430 (-) | 1174 | Protein_1220 | glycosyltransferase family 2 protein | - |
| CLA_RS06215 (CLA0443) | - | 1198434..1199981 (-) | 1548 | WP_012661948.1 | glycosyltransferase | - |
| CLA_RS06220 (CLA0442) | - | 1199990..1200862 (-) | 873 | WP_012661949.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| CLA_RS06225 (CLA0441) | waaC | 1200859..1201878 (-) | 1020 | WP_012661950.1 | lipopolysaccharide heptosyltransferase I | - |
| CLA_RS06230 (CLA0440) | - | 1201944..1202723 (+) | 780 | WP_012661951.1 | 3'-5' exonuclease | - |
| CLA_RS06235 (CLA0439) | galE | 1202782..1203768 (+) | 987 | WP_012661952.1 | UDP-glucose 4-epimerase GalE | - |
| CLA_RS06240 (CLA0438) | - | 1203762..1205456 (+) | 1695 | WP_012661953.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 304 a.a. Molecular weight: 34830.07 Da Isoelectric Point: 10.3401
>NTDB_id=32988 CLA_RS06115 WP_012661930.1 1180872..1181786(-) (waaF) [Campylobacter lari RM2100]
MRIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLDFIEKALNFKATSNALKLPIKAKSTKKILGINAGAHYGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEYFLLKEGIKSKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
RVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF
MRIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLDFIEKALNFKATSNALKLPIKAKSTKKILGINAGAHYGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEYFLLKEGIKSKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
RVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF
Nucleotide
Download Length: 915 bp
>NTDB_id=32988 CLA_RS06115 WP_012661930.1 1180872..1181786(-) (waaF) [Campylobacter lari RM2100]
ATGAGAATTTTTATAAATTTGCCTACTTGGCTTGGTGATGCGGTGATGGCAAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGACAAATTTTAAAAGCTAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTACTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAGATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCTACTAAAAAAATTCTAGGCATAAATGCTGGGGCTCATTATGGAAGTGCAAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCAACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGTATTTTCTTCTAAAAGAAGGTATCAAATCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
AGGGTAAAAACGGTGGCCGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATCTAGCAAAAACATTTTTTTAG
ATGAGAATTTTTATAAATTTGCCTACTTGGCTTGGTGATGCGGTGATGGCAAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGACAAATTTTAAAAGCTAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTACTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAGATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCTACTAAAAAAATTCTAGGCATAAATGCTGGGGCTCATTATGGAAGTGCAAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCAACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGTATTTTCTTCTAAAAGAAGGTATCAAATCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
AGGGTAAAAACGGTGGCCGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATCTAGCAAAAACATTTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
64.65 |
100 |
0.668 |