Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DSB70_RS06795 Genome accession   NZ_CP034213
Coordinates   1281794..1282423 (-) Length   209 a.a.
NCBI ID   WP_125059689.1    Uniprot ID   -
Organism   Escherichia albertii strain NCTC 9362     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1276794..1287423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB70_RS06780 helD 1277036..1279090 (-) 2055 WP_125060750.1 DNA helicase IV -
  DSB70_RS06785 - 1279213..1279659 (+) 447 WP_001261228.1 YccF domain-containing protein -
  DSB70_RS06790 yccS 1279669..1281834 (+) 2166 WP_072244615.1 YccS family putative transporter -
  DSB70_RS06795 sxy/tfoX 1281794..1282423 (-) 630 WP_125059689.1 TfoX/Sxy family DNA transformation protein Regulator
  DSB70_RS06800 sulA 1282641..1283150 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  DSB70_RS06805 ompA 1283506..1284558 (+) 1053 WP_024164823.1 porin OmpA -
  DSB70_RS06810 matP 1284633..1285085 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  DSB70_RS06815 - 1285271..1287031 (+) 1761 WP_125059690.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24319.26 Da        Isoelectric Point: 9.0264

>NTDB_id=329861 DSB70_RS06795 WP_125059689.1 1281794..1282423(-) (sxy/tfoX) [Escherichia albertii strain NCTC 9362]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELVEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=329861 DSB70_RS06795 WP_125059689.1 1281794..1282423(-) (sxy/tfoX) [Escherichia albertii strain NCTC 9362]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGTTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.952

100

0.9

Multiple sequence alignment