Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CCF17_RS03905 Genome accession   NZ_CP034212
Coordinates   722953..723582 (-) Length   209 a.a.
NCBI ID   WP_151401107.1    Uniprot ID   -
Organism   Escherichia albertii strain 2010C-3449     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 717953..728582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCF17_RS03890 helD 718195..720249 (-) 2055 WP_059253582.1 DNA helicase IV -
  CCF17_RS03895 - 720372..720818 (+) 447 WP_001261228.1 YccF domain-containing protein -
  CCF17_RS03900 yccS 720828..722993 (+) 2166 WP_151401106.1 YccS family putative transporter -
  CCF17_RS03905 sxy/tfoX 722953..723582 (-) 630 WP_151401107.1 TfoX/Sxy family DNA transformation protein Regulator
  CCF17_RS03910 sulA 723800..724309 (+) 510 WP_151401108.1 SOS-induced cell division inhibitor SulA -
  CCF17_RS03915 ompA 724665..725717 (+) 1053 WP_151401109.1 porin OmpA -
  CCF17_RS03920 matP 725792..726244 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  CCF17_RS03925 - 726430..728190 (+) 1761 WP_151401110.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24319.26 Da        Isoelectric Point: 9.0264

>NTDB_id=329839 CCF17_RS03905 WP_151401107.1 722953..723582(-) (sxy/tfoX) [Escherichia albertii strain 2010C-3449]
MKSLSYKRIYKSQEYLVTLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=329839 CCF17_RS03905 WP_151401107.1 722953..723582(-) (sxy/tfoX) [Escherichia albertii strain 2010C-3449]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGTAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTAGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.952

100

0.9

Multiple sequence alignment