Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   EBA29_RS17815 Genome accession   NZ_CP034203
Coordinates   3632459..3633604 (+) Length   381 a.a.
NCBI ID   WP_110124407.1    Uniprot ID   -
Organism   Bacillus velezensis strain 83     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627459..3638604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA29_RS17795 (EBA29_03656) - 3627934..3628650 (-) 717 WP_014419126.1 Crp/Fnr family transcriptional regulator -
  EBA29_RS17800 (EBA29_03657) narK 3628748..3629938 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  EBA29_RS17805 (EBA29_03658) argS 3630072..3631742 (-) 1671 WP_128496965.1 arginine--tRNA ligase -
  EBA29_RS17810 (EBA29_03659) - 3631739..3632167 (-) 429 WP_017418710.1 DUF1934 family protein -
  EBA29_RS17815 (EBA29_03660) rapF 3632459..3633604 (+) 1146 WP_110124407.1 tetratricopeptide repeat protein Regulator
  EBA29_RS17820 - 3633588..3633707 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  EBA29_RS17825 (EBA29_03661) - 3633905..3634108 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  EBA29_RS17830 (EBA29_03662) - 3634122..3634325 (+) 204 WP_007407641.1 hypothetical protein -
  EBA29_RS17835 (EBA29_03663) - 3634360..3634536 (+) 177 Protein_3446 DUF4177 domain-containing protein -
  EBA29_RS17840 (EBA29_03664) - 3634731..3635012 (+) 282 WP_007407643.1 hypothetical protein -
  EBA29_RS17845 (EBA29_03665) - 3635056..3635568 (+) 513 WP_031304384.1 stage II sporulation protein M -
  EBA29_RS17855 (EBA29_03667) - 3636159..3636377 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  EBA29_RS17860 (EBA29_03668) speB 3636532..3637404 (-) 873 WP_007614448.1 agmatinase -
  EBA29_RS17865 (EBA29_03669) speE 3637463..3638293 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45594.73 Da        Isoelectric Point: 4.6485

>NTDB_id=329832 EBA29_RS17815 WP_110124407.1 3632459..3633604(+) (rapF) [Bacillus velezensis strain 83]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGISYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MKCFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=329832 EBA29_RS17815 WP_110124407.1 3632459..3633604(+) (rapF) [Bacillus velezensis strain 83]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCTGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGATATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGAAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57

Multiple sequence alignment