Detailed information NTG0032979

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CLA_RS01950
• Genome accession: NC_012039
• Coordinates: 367573..368964 (+)
• Length: 463 a.a.
• NCBI ID: WP_012661131.1
• Uniprot ID: A0A5L4XCD8
• Organism: Campylobacter lari RM2100
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 362573..373964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLA_RS01935 (CLA0749)	-	362958..363602 (+)	645	WP_012661128.1	HAD family hydrolase	-
CLA_RS01940 (CLA0750)	nifJ	363720..367274 (+)	3555	WP_012661129.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CLA_RS01945 (CLA0751)	-	367341..367601 (+)	261	WP_143297314.1	hypothetical protein	-
CLA_RS01950 (CLA0752)	ctsD	367573..368964 (+)	1392	WP_012661131.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CLA_RS01955 (CLA0753)	-	368945..369274 (+)	330	WP_012661132.1	hypothetical protein	-
CLA_RS01960 (CLA0754)	-	369267..370781 (+)	1515	WP_012661133.1	GspE/PulE family protein	-
CLA_RS01965 (CLA0755)	-	370955..371938 (+)	984	WP_265092944.1	type II secretion system F family protein	-
CLA_RS01970 (CLA0756)	-	371935..372687 (-)	753	WP_012661135.1	TSUP family transporter	-
CLA_RS01975 (CLA0757)	-	372672..373421 (-)	750	WP_012661136.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52509.34 Da
• Isoelectric Point: 7.9605

>NTDB_id=32979 CLA_RS01950 WP_012661131.1 367573..368964(+) (ctsD) [Campylobacter lari RM2100]
MKKIIFLFISILSFTNIFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIA
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQDLAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=32979 CLA_RS01950 WP_012661131.1 367573..368964(+) (ctsD) [Campylobacter lari RM2100]
ATGAAAAAAATAATATTTTTATTCATTAGTATTTTAAGTTTTACAAATATTTTTGCTTCGCAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGATTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAGAAAATTGCA
GAAGAAATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATTATTACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATCTAAAAGACTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGTGGGATTAACTGGCAAGATCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCAATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTCGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGCAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGTGCCTTGTTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

3D structure

• AlphaFold DB: A0A5L4XCD8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.051	100	0.577