Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CLA_RS01590 Genome accession   NC_012039
Coordinates   292235..293413 (+) Length   392 a.a.
NCBI ID   WP_012661062.1    Uniprot ID   B9KF44
Organism   Campylobacter lari RM2100     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 287235..298413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLA_RS01570 (CLA0673) - 288354..288953 (+) 600 WP_012661058.1 gamma-glutamyl-gamma-aminobutyrate hydrolase -
  CLA_RS01575 (CLA0674) - 288950..289711 (+) 762 WP_012661059.1 sugar phosphate nucleotidyltransferase -
  CLA_RS01580 (CLA0675) - 289708..290214 (+) 507 WP_012661060.1 adenylyl-sulfate kinase -
  CLA_RS01585 (CLA0676) - 290211..292238 (+) 2028 WP_012661061.1 capsular polysaccharide biosynthesis protein -
  CLA_RS01590 (CLA0677) kpsS 292235..293413 (+) 1179 WP_012661062.1 capsule biosynthesis protein Regulator
  CLA_RS08345 (CLA_0320) - 293410..294918 (-) 1509 WP_012661063.1 SGNH/GDSL hydrolase family protein -
  CLA_RS01600 (CLA0679) - 295083..296213 (+) 1131 WP_012661064.1 hypothetical protein -
  CLA_RS01605 (CLA0680) - 296222..297595 (+) 1374 WP_012661065.1 cytochrome P450 -
  CLA_RS01610 (CLA0681) - 297592..297945 (+) 354 WP_012661066.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46400.98 Da        Isoelectric Point: 10.1447

>NTDB_id=32978 CLA_RS01590 WP_012661062.1 292235..293413(+) (kpsS) [Campylobacter lari RM2100]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPKAKVYKVNFNGGDFFFYPFKSINYTKSLADLEDFYKKLFEEKQIQV
IIMYNDCRKVHEIAINVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFSSFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLYLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQINGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=32978 CLA_RS01590 WP_012661062.1 292235..293413(+) (kpsS) [Campylobacter lari RM2100]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGGCCTGTGGGAGGATTTTTTCG
TAAAATTGCTACAAAAATTCCAAAAGCTAAGGTTTATAAAGTAAATTTTAATGGTGGAGATTTTTTCTTTTATCCTTTTA
AAAGCATTAATTACACTAAAAGTTTAGCTGATCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCATTATGTATAATGATTGTAGAAAAGTTCATGAAATAGCCATTAATGTTGCTAAGCAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCCACCTTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTCTCAAGCACTTTTAAAAATATG
GCCTTTTCTTCATTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACATCATAGAAGTTT
AAAACTATTTGACTTTTTACCTTGGCTTTGTTCAGTATATAGAAAAAATAAATACAAAATTACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCTCTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGATACTCAACTCTCCCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAGGTGATTATCTCTTTTGCTAATCATGCCAAAGCAAAGTCATACCTAGTTTT
TAAACACCATCCTATGGATCGTGGCTATAGGGATTACACAAAACTTATAGAAGATTTGAGCTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTGCATGATTTGTATTTACCTACACTCTTAATCAATGCAAGAGGCACTATAGTTATAAATAGTACA
GTAGGACTTTCTGCTTTATATCACAATAGCCCTTTAAAAGTTATGGGAAAAGCTTTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGGGCATATAAGCCTGATGCTGTTTTGCACGCTAAATTTAGAAATT
ATGTCATTTATAAAACCCAAATCAATGGAAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9KF44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.278

100

0.628

Multiple sequence alignment