Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   EBA29_RS01635 Genome accession   NZ_CP034203
Coordinates   317355..317753 (-) Length   132 a.a.
NCBI ID   WP_029973909.1    Uniprot ID   -
Organism   Bacillus velezensis strain 83     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 312355..322753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA29_RS01610 (EBA29_00326) - 312527..313729 (+) 1203 WP_014416870.1 GTP-binding protein -
  EBA29_RS01615 (EBA29_00327) - 313794..314930 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  EBA29_RS01620 (EBA29_00328) - 314945..315379 (+) 435 WP_014416871.1 RDD family protein -
  EBA29_RS01625 (EBA29_00329) - 315451..315774 (+) 324 WP_007409357.1 YckD family protein -
  EBA29_RS01630 (EBA29_00330) - 315878..317314 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  EBA29_RS01635 (EBA29_00331) nin/comJ 317355..317753 (-) 399 WP_029973909.1 competence protein ComJ Regulator
  EBA29_RS01640 (EBA29_00332) nucA/comI 317774..318211 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  EBA29_RS01645 (EBA29_00334) hxlB 318542..319099 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  EBA29_RS01650 (EBA29_00335) hxlA 319096..319731 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  EBA29_RS01655 (EBA29_00336) - 319963..320325 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14877.90 Da        Isoelectric Point: 4.7846

>NTDB_id=329767 EBA29_RS01635 WP_029973909.1 317355..317753(-) (nin/comJ) [Bacillus velezensis strain 83]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMAKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=329767 EBA29_RS01635 WP_029973909.1 317355..317753(-) (nin/comJ) [Bacillus velezensis strain 83]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGGCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment