Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EBA29_RS00230 Genome accession   NZ_CP034203
Coordinates   45489..45779 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain 83     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40489..50779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA29_RS00190 (EBA29_00039) darA 40506..40835 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  EBA29_RS00195 (EBA29_00040) - 40848..41288 (+) 441 WP_128496395.1 DUF327 family protein -
  EBA29_RS00200 (EBA29_00041) holB 41300..42289 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  EBA29_RS00205 (EBA29_00042) ricT 42292..43119 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  EBA29_RS00210 (EBA29_00043) yabA 43134..43493 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  EBA29_RS00215 (EBA29_00044) - 43554..44297 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EBA29_RS00220 (EBA29_00045) - 44284..44583 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  EBA29_RS00225 (EBA29_00046) rsmI 44558..45439 (+) 882 WP_103527212.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EBA29_RS00230 (EBA29_00047) abrB 45489..45779 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  EBA29_RS00235 (EBA29_00048) metG 46262..48253 (+) 1992 WP_094296506.1 methionine--tRNA ligase -
  EBA29_RS00240 (EBA29_00049) - 48330..49097 (+) 768 WP_021494159.1 TatD family hydrolase -
  EBA29_RS00245 (EBA29_00050) - 49232..50557 (+) 1326 WP_128496396.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=329763 EBA29_RS00230 WP_169510469.1 45489..45779(-) (abrB) [Bacillus velezensis strain 83]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=329763 EBA29_RS00230 WP_169510469.1 45489..45779(-) (abrB) [Bacillus velezensis strain 83]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment