Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EHF33_RS09590 Genome accession   NZ_CP034183
Coordinates   1947237..1948349 (+) Length   370 a.a.
NCBI ID   WP_124870569.1    Uniprot ID   A0A3G8YDH1
Organism   Deinococcus psychrotolerans strain S14-83     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1942237..1953349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF33_RS09575 (EHF33_09575) - 1943792..1945417 (-) 1626 WP_124870564.1 hypothetical protein -
  EHF33_RS09580 (EHF33_09580) - 1945429..1946430 (-) 1002 WP_124870567.1 roadblock/LC7 domain-containing protein -
  EHF33_RS09590 (EHF33_09590) dprA 1947237..1948349 (+) 1113 WP_124870569.1 DNA-processing protein DprA Machinery gene
  EHF33_RS09595 (EHF33_09595) - 1948378..1949124 (-) 747 WP_124870572.1 SDR family oxidoreductase -
  EHF33_RS09600 (EHF33_09600) - 1949121..1949564 (-) 444 WP_124870575.1 NUDIX domain-containing protein -
  EHF33_RS09605 (EHF33_09605) - 1949655..1950287 (-) 633 WP_124870578.1 response regulator transcription factor -
  EHF33_RS09610 (EHF33_09610) - 1950280..1951845 (-) 1566 WP_124870581.1 sensor histidine kinase -
  EHF33_RS09615 (EHF33_09615) - 1952190..1953314 (+) 1125 WP_124870584.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 38455.95 Da        Isoelectric Point: 6.2347

>NTDB_id=329723 EHF33_RS09590 WP_124870569.1 1947237..1948349(+) (dprA) [Deinococcus psychrotolerans strain S14-83]
MSLMDAAPDLNLPEDTDAELLALLTLRFTPALGPRRIENLRRHFGSAQAVLGASLTQLRAVPGLDTKSLSAIGAAGVGVR
AQQELSRAREAGVQVLGRGLEGYPAALEALQDPPAALWVRGADLPQEVVPRAVGIVGTRAASDHALKFTRQLSGDLARAG
VNVVSGLARGIDSAAHQAALDAGGVSTALLGCGVDVIYPAENARLAARLTLVSEYPMGTRPATHHFPQRNRLIAALSAGS
VVIEGDLKSGAMITATHALECGRSAFAVPGRAGDPLAAGPHRLLREGAVLTENVSDVLHELGWGEAPAPVHLDMSPEQAL
VYAALPETGAVLLDDVVSRSGLNISEAQLALTMLGLCGLVDERGGRYLRR

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=329723 EHF33_RS09590 WP_124870569.1 1947237..1948349(+) (dprA) [Deinococcus psychrotolerans strain S14-83]
ATGAGCTTGATGGACGCTGCCCCCGACCTGAACCTTCCCGAAGACACAGACGCCGAGTTGCTGGCGCTGCTGACCCTGCG
CTTCACACCCGCTCTGGGGCCGCGCCGCATCGAGAACCTGCGGCGGCATTTCGGCTCGGCGCAGGCGGTGCTGGGCGCTT
CGCTGACCCAGTTGCGGGCAGTGCCGGGCCTCGATACCAAATCGCTGAGCGCCATTGGTGCGGCGGGGGTGGGCGTCCGG
GCGCAGCAAGAACTCAGCCGCGCCCGCGAAGCTGGAGTGCAGGTGCTGGGGCGCGGGCTGGAAGGCTATCCGGCGGCGCT
CGAAGCCCTGCAAGACCCGCCCGCTGCGCTGTGGGTACGCGGCGCTGATCTGCCGCAGGAGGTGGTGCCGCGTGCGGTGG
GCATCGTCGGTACCCGCGCCGCCAGCGACCACGCCCTCAAATTCACCCGCCAGTTGTCGGGCGACCTCGCCCGCGCCGGA
GTCAACGTGGTCAGCGGCCTGGCACGCGGCATCGACAGCGCCGCCCACCAAGCCGCTTTGGACGCGGGCGGCGTCAGCAC
GGCGCTCTTGGGCTGCGGGGTGGACGTGATTTACCCCGCCGAAAATGCCCGCCTCGCTGCCCGCCTGACTTTGGTCAGCG
AGTACCCGATGGGCACGCGGCCTGCCACCCACCATTTTCCGCAGCGAAACCGCTTGATTGCCGCTCTGAGCGCCGGTTCG
GTGGTCATCGAGGGCGATTTGAAAAGCGGCGCGATGATTACCGCCACGCACGCGCTCGAATGCGGGCGCAGCGCCTTCGC
GGTGCCGGGCCGGGCGGGTGATCCCTTAGCGGCTGGCCCCCACCGCTTGCTGCGCGAGGGCGCGGTGCTGACCGAAAACG
TGAGCGACGTGCTGCACGAACTCGGCTGGGGTGAAGCGCCCGCGCCCGTCCACCTAGACATGAGCCCCGAGCAGGCGCTG
GTGTACGCCGCCCTGCCCGAAACCGGCGCGGTTTTGCTGGACGACGTGGTGTCGCGCAGCGGGCTGAACATCAGCGAGGC
GCAACTGGCCCTGACCATGCTGGGGTTGTGCGGCCTCGTGGACGAACGGGGCGGGCGGTATCTACGCCGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(89-290)

DprA winged helix domain (DprA_WH)

(313-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8YDH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.323

95.405

0.595

Multiple sequence alignment