Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EHF33_RS08745 Genome accession   NZ_CP034183
Coordinates   1777293..1777676 (-) Length   127 a.a.
NCBI ID   WP_124870173.1    Uniprot ID   A0A3G8YNV8
Organism   Deinococcus psychrotolerans strain S14-83     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772293..1782676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF33_RS08730 (EHF33_08730) - 1772572..1774224 (+) 1653 WP_124870164.1 GMC family oxidoreductase -
  EHF33_RS08735 (EHF33_08735) - 1774228..1774965 (-) 738 WP_124870167.1 GNAT family N-acetyltransferase -
  EHF33_RS08740 (EHF33_08740) comEC 1775057..1777246 (-) 2190 WP_241191106.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EHF33_RS08745 (EHF33_08745) comEA 1777293..1777676 (-) 384 WP_124870173.1 ComEA family DNA-binding protein Machinery gene
  EHF33_RS08750 (EHF33_08750) - 1777931..1779604 (+) 1674 WP_124870176.1 long-chain fatty acid--CoA ligase -
  EHF33_RS08755 (EHF33_08755) - 1779638..1780075 (+) 438 WP_124870180.1 GlcG/HbpS family heme-binding protein -
  EHF33_RS08760 (EHF33_08760) - 1780104..1780637 (-) 534 WP_124870181.1 DUF4385 domain-containing protein -
  EHF33_RS08765 (EHF33_08765) - 1780690..1781364 (-) 675 WP_241191107.1 Dps family protein -
  EHF33_RS08770 (EHF33_08770) - 1781453..1782361 (-) 909 WP_124870182.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 12855.93 Da        Isoelectric Point: 8.0699

>NTDB_id=329722 EHF33_RS08745 WP_124870173.1 1777293..1777676(-) (comEA) [Deinococcus psychrotolerans strain S14-83]
MSGSSPLERGAAAVLTALALGCGAWALLPAFSPALHRPTVTHAALPVSATAEAAPTYATTASVRPLISGRLNLNTATEEQ
LEALPSIGPALAARLIAARPYHTLADLDAVRGVGPVLLGKLTPLVSF

Nucleotide


Download         Length: 384 bp        

>NTDB_id=329722 EHF33_RS08745 WP_124870173.1 1777293..1777676(-) (comEA) [Deinococcus psychrotolerans strain S14-83]
ATGTCTGGTTCTTCACCGTTGGAGCGCGGCGCGGCGGCAGTCTTGACCGCGCTGGCACTCGGTTGCGGGGCTTGGGCGCT
GCTCCCTGCCTTCAGTCCCGCTCTGCACCGACCAACCGTGACCCACGCGGCGCTGCCCGTTTCGGCCACCGCTGAGGCCG
CCCCAACTTATGCCACCACCGCCAGCGTGAGGCCGCTGATTTCTGGCAGGCTCAATCTCAACACCGCCACCGAAGAGCAG
CTCGAAGCCCTGCCCAGCATCGGCCCAGCACTGGCTGCCCGCTTAATCGCTGCCCGCCCGTATCACACCCTCGCCGACCT
TGACGCGGTGCGCGGGGTGGGGCCGGTGCTGCTCGGCAAACTGACCCCACTCGTGTCGTTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(70-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8YNV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.677

97.638

0.583

Multiple sequence alignment