Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   EHF33_RS08740 Genome accession   NZ_CP034183
Coordinates   1775057..1777246 (-) Length   729 a.a.
NCBI ID   WP_241191106.1    Uniprot ID   -
Organism   Deinococcus psychrotolerans strain S14-83     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1770057..1782246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF33_RS08715 (EHF33_08715) - 1770281..1771234 (-) 954 WP_124870156.1 NAD-dependent epimerase/dehydratase family protein -
  EHF33_RS08720 (EHF33_08720) - 1771251..1771790 (+) 540 WP_124870159.1 2'-5' RNA ligase family protein -
  EHF33_RS08725 (EHF33_08725) - 1771863..1772390 (+) 528 WP_124870161.1 multidrug DMT transporter -
  EHF33_RS08730 (EHF33_08730) - 1772572..1774224 (+) 1653 WP_124870164.1 GMC family oxidoreductase -
  EHF33_RS08735 (EHF33_08735) - 1774228..1774965 (-) 738 WP_124870167.1 GNAT family N-acetyltransferase -
  EHF33_RS08740 (EHF33_08740) comEC 1775057..1777246 (-) 2190 WP_241191106.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EHF33_RS08745 (EHF33_08745) comEA 1777293..1777676 (-) 384 WP_124870173.1 ComEA family DNA-binding protein Machinery gene
  EHF33_RS08750 (EHF33_08750) - 1777931..1779604 (+) 1674 WP_124870176.1 long-chain fatty acid--CoA ligase -
  EHF33_RS08755 (EHF33_08755) - 1779638..1780075 (+) 438 WP_124870180.1 GlcG/HbpS family heme-binding protein -
  EHF33_RS08760 (EHF33_08760) - 1780104..1780637 (-) 534 WP_124870181.1 DUF4385 domain-containing protein -
  EHF33_RS08765 (EHF33_08765) - 1780690..1781364 (-) 675 WP_241191107.1 Dps family protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 77786.20 Da        Isoelectric Point: 9.9213

>NTDB_id=329721 EHF33_RS08740 WP_241191106.1 1775057..1777246(-) (comEC) [Deinococcus psychrotolerans strain S14-83]
MQADATYSPRRWPVPAYPVPAALAVIGGVLLGFGALWGAAVLVVALALSWPAGKGWLLGACLVLAVCGFARERAWQAAPD
ALLSWVGAQATLIGDWDGQLLHLSSPAAAVALAPKPKGPAGRLTVRGRLVRPEGRRIPGGFDYAFWLRMQGVREVLVAAE
IKHLKPEGGVRGWFRRGLSAGLSPRESALLRAVELGERNDISQESFNDGLNVRDAFTRAGLAHLMALSGQNVALLVGALT
WLLARLLPLKWTNARYPLMLTVLAGFLWLVGPTPSITRAVLMGVLVLLSLWLGRGKLDVYGVLGLAAIASLLYQPAWLFD
VGFQLSFLAVLGLSVSNRVAALLPAKWPLWLRLALVATPCAELATLPVVLHTFGQLPLLSLPANLAAAALMAVLVPLGYL
AGLLGPLAVAVNWALGPLSEALLKVVDIFGRAPVLTWGMISPAGFAVYAVFAAAAVLTLYRLLPLWVLPLTALLGGVSTA
LPSLLNPPSEIVYLDVGQGDSSLIRTPKLTMLIDGGGTPRGDYDVGKGTVLPALRAMNVRSLDVMVATHADADHIEGLIS
VLLGLPVGELWIGQRKDDPNLNMLLRAAEARHVPVREVRRGDSVQAGKATFTVLWPTGKVWSDADNENSVVIKFDTPKFH
TVFLGDLPDPLESELGVGKLDVLKTAHHGSRFSSGQAFLDETRPHDAVISVGRSNSYGHPNPQVLDRLQASGVKVWRTDQ
VGTVRWPLP

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=329721 EHF33_RS08740 WP_241191106.1 1775057..1777246(-) (comEC) [Deinococcus psychrotolerans strain S14-83]
GTGCAGGCGGACGCGACCTACTCGCCGCGCCGCTGGCCCGTTCCGGCTTATCCGGTTCCAGCGGCGCTGGCAGTCATTGG
CGGCGTGCTGCTGGGCTTCGGAGCGCTCTGGGGCGCGGCGGTACTTGTTGTGGCCCTGGCGCTGAGCTGGCCTGCCGGCA
AGGGTTGGCTGCTGGGGGCCTGTCTGGTGTTGGCGGTGTGCGGCTTCGCGCGCGAGCGGGCCTGGCAAGCCGCTCCCGAC
GCGCTTTTAAGCTGGGTGGGTGCTCAAGCCACCCTGATTGGCGACTGGGACGGCCAACTGCTGCACCTCAGTAGCCCTGC
GGCGGCAGTGGCGCTGGCACCCAAGCCCAAGGGGCCAGCCGGACGCCTGACCGTCCGTGGGCGGCTGGTTCGCCCAGAGG
GTCGGCGCATTCCTGGCGGCTTCGATTACGCGTTTTGGCTGCGGATGCAGGGTGTGCGCGAAGTCTTGGTGGCCGCCGAG
ATCAAGCATTTGAAGCCTGAAGGCGGGGTGCGCGGTTGGTTTCGGCGGGGCCTGAGCGCCGGTCTCTCACCGCGTGAGTC
GGCCCTGCTACGGGCTGTGGAATTGGGCGAGCGCAACGATATCTCGCAGGAAAGCTTCAATGACGGCCTGAATGTCCGCG
ACGCTTTCACGCGGGCGGGTTTGGCACACCTGATGGCGCTCAGCGGGCAAAACGTGGCGCTGCTGGTGGGAGCGCTGACT
TGGCTCCTGGCCCGTTTATTGCCGCTCAAATGGACAAACGCCCGCTACCCGCTGATGCTCACGGTGCTGGCGGGTTTTTT
ATGGTTGGTCGGCCCCACGCCCAGCATCACCCGCGCCGTGCTGATGGGCGTCTTGGTGCTGCTCTCGTTGTGGCTGGGGC
GCGGTAAGCTCGACGTCTACGGTGTGTTGGGCTTGGCGGCCATCGCCAGCTTGCTGTATCAACCGGCTTGGTTGTTTGAC
GTGGGCTTTCAACTTAGTTTTCTGGCGGTGCTGGGCCTGAGTGTGTCAAACAGGGTCGCTGCTCTGCTGCCCGCAAAGTG
GCCGCTGTGGCTGCGCCTCGCGCTGGTCGCCACCCCCTGCGCCGAACTCGCCACTTTGCCGGTGGTGCTGCACACCTTCG
GCCAGTTGCCGCTGCTGAGCCTCCCCGCCAACCTCGCCGCCGCCGCGCTGATGGCCGTGCTGGTGCCGCTCGGCTACCTC
GCCGGACTGCTGGGGCCTCTGGCGGTGGCGGTCAATTGGGCGCTCGGCCCGCTGTCGGAAGCGCTGCTGAAAGTGGTGGA
TATTTTTGGCCGCGCTCCGGTGCTGACCTGGGGAATGATCAGTCCGGCAGGGTTCGCGGTTTACGCGGTATTTGCCGCTG
CCGCTGTGCTGACCCTTTACCGCCTCCTGCCGCTGTGGGTCTTGCCGCTCACCGCCTTGCTGGGCGGCGTGTCCACTGCT
TTGCCGAGCCTGCTCAACCCACCCAGCGAAATCGTCTATCTGGACGTCGGACAGGGCGACAGTTCGCTGATTCGCACTCC
CAAGCTCACCATGCTGATTGATGGCGGCGGCACTCCCAGAGGCGATTACGACGTCGGCAAAGGCACGGTGCTGCCTGCCT
TGCGGGCCATGAACGTGCGCTCCCTCGACGTGATGGTCGCCACCCACGCCGACGCCGATCACATCGAAGGCCTGATCAGC
GTGCTGCTGGGCTTGCCAGTAGGCGAGTTGTGGATCGGTCAGCGCAAAGACGACCCCAATCTCAATATGCTGCTCAGAGC
CGCCGAGGCCCGCCACGTGCCGGTGCGCGAAGTACGGCGCGGTGACAGCGTACAAGCCGGAAAAGCCACCTTCACGGTGC
TGTGGCCCACTGGCAAAGTCTGGTCGGATGCCGACAACGAAAATAGCGTGGTCATCAAGTTCGATACGCCCAAGTTTCAC
ACCGTCTTTCTGGGCGATCTTCCCGACCCGCTGGAAAGTGAGCTGGGCGTCGGCAAGTTGGATGTTCTCAAAACGGCCCA
CCACGGCAGCCGCTTTTCGAGCGGTCAAGCGTTTTTGGACGAAACCCGCCCGCATGACGCCGTCATCAGTGTCGGGCGAT
CTAACAGTTACGGTCACCCCAACCCGCAAGTGCTCGACCGCCTTCAAGCGTCCGGTGTAAAAGTCTGGCGCACCGATCAG
GTGGGAACCGTGCGCTGGCCCTTGCCTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-691)

Competence protein (Competence)

(212-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.398

91.221

0.542

Multiple sequence alignment