Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EHF33_RS03915 Genome accession   NZ_CP034183
Coordinates   806634..807281 (+) Length   215 a.a.
NCBI ID   WP_124868076.1    Uniprot ID   A0A3G8YAR2
Organism   Deinococcus psychrotolerans strain S14-83     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 801634..812281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF33_RS03890 (EHF33_03890) - 801823..802428 (-) 606 Protein_780 IS630 family transposase -
  EHF33_RS03895 (EHF33_03895) - 802437..802907 (-) 471 WP_124868070.1 helix-turn-helix domain-containing protein -
  EHF33_RS03900 (EHF33_03900) - 802973..804091 (-) 1119 WP_124868072.1 BMP family lipoprotein -
  EHF33_RS03905 (EHF33_03905) - 804344..805798 (-) 1455 WP_241191242.1 PLP-dependent aminotransferase family protein -
  EHF33_RS03910 (EHF33_03910) - 806086..806634 (+) 549 WP_241191243.1 hypothetical protein -
  EHF33_RS03915 (EHF33_03915) comF 806634..807281 (+) 648 WP_124868076.1 ComF family protein Machinery gene
  EHF33_RS03920 (EHF33_03920) - 807289..807810 (-) 522 WP_124868078.1 DUF1684 domain-containing protein -
  EHF33_RS03925 (EHF33_03925) - 807824..808042 (-) 219 WP_164473398.1 RNA-binding S4 domain-containing protein -
  EHF33_RS21030 - 808066..808590 (-) 525 WP_241191244.1 dockerin type I domain-containing protein -
  EHF33_RS03935 (EHF33_03935) - 808620..809714 (-) 1095 WP_124868082.1 hypothetical protein -
  EHF33_RS03940 (EHF33_03940) - 809711..810838 (-) 1128 WP_124868084.1 Ig domain-containing protein -
  EHF33_RS03945 (EHF33_03945) - 810974..812101 (+) 1128 WP_124872796.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23016.73 Da        Isoelectric Point: 10.7390

>NTDB_id=329716 EHF33_RS03915 WP_124868076.1 806634..807281(+) (comF) [Deinococcus psychrotolerans strain S14-83]
MDGLRSALRALLPRPCPGCAQPLGSAAGLCRACCAGLHPRLERHSMLSNAVTPHLVVLGEHKAVLRRAARELKYSGHRDL
AAVLGQAIASGVPSEWKLRAVSAVPMSGIRQRQRHFNHAEVLARQVAAELGLPYQESLKRTRHTTQQAKLSGEARLSNLI
GAFAAQSSGLMVSGKITQTLLLVDDVMTTGATLKACRDALAESGVNQVFYAVITR

Nucleotide


Download         Length: 648 bp        

>NTDB_id=329716 EHF33_RS03915 WP_124868076.1 806634..807281(+) (comF) [Deinococcus psychrotolerans strain S14-83]
ATGGATGGGCTGCGCTCTGCGCTCCGGGCCTTGCTGCCGCGCCCTTGTCCGGGCTGCGCTCAGCCGCTGGGCAGCGCAGC
GGGCCTGTGCCGAGCCTGCTGCGCTGGACTGCACCCGCGTTTGGAGCGCCACTCGATGCTGAGCAATGCTGTGACGCCGC
ATCTGGTGGTGCTGGGCGAACACAAAGCCGTGCTGCGCCGCGCCGCCCGCGAACTCAAATACAGCGGCCACCGCGACCTC
GCCGCCGTGCTGGGGCAGGCTATTGCCAGCGGCGTGCCGAGCGAATGGAAGCTGCGGGCCGTCAGCGCCGTGCCGATGTC
GGGGATACGCCAGCGCCAGCGGCATTTCAATCACGCCGAAGTGCTGGCCAGACAGGTGGCCGCCGAACTCGGCTTGCCGT
ATCAGGAAAGCTTGAAGCGCACCCGCCACACCACCCAGCAAGCCAAACTCAGCGGCGAGGCGCGGCTGAGCAACCTCATC
GGCGCATTTGCGGCGCAGAGCAGCGGGCTGATGGTCAGTGGGAAGATCACGCAGACGCTTTTACTGGTGGATGACGTGAT
GACAACCGGCGCGACTCTGAAGGCTTGCCGCGACGCGCTGGCAGAGAGCGGCGTCAATCAGGTGTTTTACGCGGTCATCA
CGCGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8YAR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.769

96.744

0.54

Multiple sequence alignment