Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EHF33_RS02180 Genome accession   NZ_CP034183
Coordinates   437504..438100 (-) Length   198 a.a.
NCBI ID   WP_124867468.1    Uniprot ID   A0A3G8Y8J6
Organism   Deinococcus psychrotolerans strain S14-83     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 432504..443100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF33_RS02160 (EHF33_02160) - 434425..436311 (+) 1887 WP_124867460.1 ABC transporter ATP-binding protein -
  EHF33_RS02165 (EHF33_02165) - 436383..436721 (-) 339 WP_124867462.1 roadblock/LC7 domain-containing protein -
  EHF33_RS02170 (EHF33_02170) - 436711..437058 (-) 348 WP_124867464.1 roadblock/LC7 domain-containing protein -
  EHF33_RS02175 (EHF33_02175) - 437055..437402 (-) 348 WP_124867466.1 roadblock/LC7 domain-containing protein -
  EHF33_RS02180 (EHF33_02180) recR 437504..438100 (-) 597 WP_124867468.1 recombination mediator RecR Machinery gene
  EHF33_RS02185 (EHF33_02185) - 438129..438425 (-) 297 WP_124867470.1 YbaB/EbfC family nucleoid-associated protein -
  EHF33_RS02190 (EHF33_02190) - 438630..439454 (-) 825 WP_124867472.1 glycine-rich domain-containing protein -
  EHF33_RS02195 (EHF33_02195) pckA 439667..441277 (-) 1611 WP_124867474.1 phosphoenolpyruvate carboxykinase (ATP) -
  EHF33_RS02200 (EHF33_02200) - 441530..441979 (+) 450 WP_124867476.1 GNAT family N-acetyltransferase -
  EHF33_RS02205 (EHF33_02205) - 442071..442685 (+) 615 WP_124867478.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21575.06 Da        Isoelectric Point: 5.3281

>NTDB_id=329714 EHF33_RS02180 WP_124867468.1 437504..438100(-) (recR) [Deinococcus psychrotolerans strain S14-83]
MKYPSSLVALIRELSRLPGIGPKSAQRLAFYLFEQPREDIERLAGSLLDAKRELHTCPVCFNITDAELCDVCADPTRMQN
LICVVEEPGDVIAIEKSGEYTGLYHVLHGVLSPMNGVGPDKLQLRPLLPRLQSGIEVILATGTTVEGEATAMYVQRLIEP
LGVMVSRIAYGLPVGGALEYADEVTLGRALSGRQRVSK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=329714 EHF33_RS02180 WP_124867468.1 437504..438100(-) (recR) [Deinococcus psychrotolerans strain S14-83]
GTGAAATATCCCTCCAGTTTGGTGGCGCTGATCCGCGAACTCTCGCGCTTGCCGGGCATTGGCCCCAAAAGTGCTCAGCG
CCTCGCCTTTTACCTGTTCGAGCAGCCGCGTGAAGACATCGAGCGCCTCGCCGGATCGCTCCTCGACGCCAAGCGCGAAC
TGCATACCTGTCCGGTCTGCTTTAACATCACCGACGCAGAACTGTGCGATGTCTGCGCCGACCCGACTAGGATGCAAAAC
CTGATCTGCGTGGTGGAAGAGCCTGGCGACGTGATCGCCATTGAAAAAAGCGGCGAGTACACCGGCCTTTATCACGTGCT
GCACGGCGTTCTAAGTCCCATGAACGGCGTCGGCCCTGATAAGCTGCAACTCAGGCCGCTGCTGCCCAGACTCCAGAGCG
GTATCGAAGTGATCTTGGCCACCGGCACCACCGTGGAGGGCGAAGCCACCGCCATGTATGTGCAGCGCTTGATCGAGCCG
CTGGGCGTCATGGTTTCGCGCATCGCTTACGGCCTGCCGGTGGGCGGAGCGCTCGAATACGCCGATGAAGTCACGCTGGG
ACGGGCGCTGAGTGGCCGCCAGCGGGTCAGCAAATAA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-77)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8Y8J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

81.818

100

0.818

Multiple sequence alignment