Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BVMH_RS01775 Genome accession   NZ_CP034176
Coordinates   329516..329914 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain MH25     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 324516..334914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVMH_RS01750 (BVMH_01750) - 324687..325889 (+) 1203 WP_039062576.1 GTP-binding protein -
  BVMH_RS01755 (BVMH_01755) - 325954..327090 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  BVMH_RS01760 (BVMH_01760) - 327105..327539 (+) 435 WP_012116767.1 RDD family protein -
  BVMH_RS01765 (BVMH_01765) - 327612..327935 (+) 324 WP_007409357.1 YckD family protein -
  BVMH_RS01770 (BVMH_01770) - 328039..329475 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  BVMH_RS01775 (BVMH_01775) nin/comJ 329516..329914 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  BVMH_RS01780 (BVMH_01780) nucA/comI 329935..330372 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BVMH_RS01785 (BVMH_01785) hxlB 330731..331288 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  BVMH_RS01790 (BVMH_01790) hxlA 331285..331920 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  BVMH_RS01795 (BVMH_01795) - 332152..332514 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=329594 BVMH_RS01775 WP_007609299.1 329516..329914(-) (nin/comJ) [Bacillus velezensis strain MH25]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=329594 BVMH_RS01775 WP_007609299.1 329516..329914(-) (nin/comJ) [Bacillus velezensis strain MH25]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCCAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment