Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EIH07_RS03000 Genome accession   NZ_CP034173
Coordinates   628706..629356 (-) Length   216 a.a.
NCBI ID   WP_124805790.1    Uniprot ID   -
Organism   Chryseobacterium taklimakanense strain F9257     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 623706..634356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIH07_RS02970 (EIH07_02970) - 624243..624884 (-) 642 WP_095072905.1 DUF4290 domain-containing protein -
  EIH07_RS02975 (EIH07_02975) - 624921..625331 (-) 411 WP_124805786.1 thiol-disulfide oxidoreductase DCC family protein -
  EIH07_RS02980 (EIH07_02980) - 625318..625809 (-) 492 WP_124805787.1 heme-binding domain-containing protein -
  EIH07_RS02985 (EIH07_02985) der 625986..627296 (+) 1311 WP_095072912.1 ribosome biogenesis GTPase Der -
  EIH07_RS02990 (EIH07_02990) - 627442..627789 (+) 348 WP_124805788.1 four helix bundle protein -
  EIH07_RS02995 (EIH07_02995) upp 627905..628555 (+) 651 WP_124805789.1 uracil phosphoribosyltransferase -
  EIH07_RS11830 - 628560..628709 (+) 150 WP_164466948.1 hypothetical protein -
  EIH07_RS03000 (EIH07_03000) comF 628706..629356 (-) 651 WP_124805790.1 ComF family protein Machinery gene
  EIH07_RS03005 (EIH07_03005) - 629402..630871 (-) 1470 WP_124805791.1 helix-turn-helix domain-containing protein -
  EIH07_RS03010 (EIH07_03010) aceB 631147..632724 (+) 1578 WP_124805792.1 malate synthase A -
  EIH07_RS03015 (EIH07_03015) aceA 632883..634169 (+) 1287 WP_185126780.1 isocitrate lyase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25115.14 Da        Isoelectric Point: 8.8782

>NTDB_id=329579 EIH07_RS03000 WP_124805790.1 628706..629356(-) (comF) [Chryseobacterium taklimakanense strain F9257]
MFLDFLFPNRCLNCNSIINAENLVCEACIDQIHFTHHIFGEENELKKRCRLLFPVENAYALMQFGEESLSRKIVHDLKYK
SREKVGKILAKWTAKRLDFKNEKPDLLVSVPLHPKKLKERGYNQLHLFTETLSEHFEIPYDHTLIKRNFYKKAQALKDKA
HRSATEKLFSISKPVQNQHVLLIDDVFTTGNTMSSVAWEILKEGNNKVSVLVMAVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=329579 EIH07_RS03000 WP_124805790.1 628706..629356(-) (comF) [Chryseobacterium taklimakanense strain F9257]
ATGTTTCTGGATTTTCTTTTTCCGAACAGGTGCCTGAACTGCAACAGCATTATTAATGCGGAAAATTTGGTTTGTGAAGC
GTGCATAGATCAGATTCATTTCACCCACCATATTTTTGGAGAAGAAAATGAACTAAAAAAGCGGTGCAGATTACTTTTCC
CTGTTGAAAATGCTTACGCATTAATGCAGTTTGGGGAGGAAAGCCTTTCCCGAAAAATTGTGCATGATCTGAAATATAAA
AGTCGCGAAAAAGTTGGGAAAATTCTTGCAAAATGGACTGCAAAACGTCTGGATTTTAAAAATGAAAAGCCTGATTTGTT
GGTGTCTGTTCCGCTGCATCCGAAGAAGCTGAAAGAGCGCGGGTATAATCAGCTGCATCTGTTTACGGAAACGCTATCAG
AACATTTTGAAATTCCGTACGATCACACTTTAATCAAAAGAAATTTCTATAAAAAAGCGCAGGCACTGAAGGACAAAGCA
CACCGTTCGGCAACGGAAAAACTTTTTTCAATTTCAAAACCAGTTCAAAATCAACACGTTTTGCTTATTGATGATGTTTT
CACCACCGGGAATACGATGAGTTCTGTGGCGTGGGAAATTTTGAAAGAAGGAAATAATAAGGTGAGCGTTCTGGTAATGG
CTGTGGATTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.315

100

0.523

Multiple sequence alignment