Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EH197_RS11885 Genome accession   NZ_CP034169
Coordinates   2310559..2312376 (+) Length   605 a.a.
NCBI ID   WP_123863983.1    Uniprot ID   -
Organism   Enterococcus avium strain 352     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2305559..2317376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH197_RS11865 (EH197_11865) - 2306561..2307280 (-) 720 WP_049218986.1 HAD family hydrolase -
  EH197_RS11870 (EH197_11870) spxA 2308061..2308459 (+) 399 WP_010739854.1 transcriptional regulator SpxA -
  EH197_RS11875 (EH197_11875) - 2308697..2309341 (+) 645 WP_016181497.1 adaptor protein MecA -
  EH197_RS11880 (EH197_11880) - 2309449..2310447 (+) 999 WP_123863984.1 competence protein CoiA family protein -
  EH197_RS11885 (EH197_11885) pepF 2310559..2312376 (+) 1818 WP_123863983.1 oligoendopeptidase F Regulator
  EH197_RS11890 (EH197_11890) - 2312752..2313933 (+) 1182 WP_049218979.1 class C sortase -
  EH197_RS11895 (EH197_11895) - 2313935..2315113 (+) 1179 WP_102871529.1 class C sortase -
  EH197_RS11900 (EH197_11900) - 2315146..2315793 (-) 648 WP_016181503.1 DsbA family protein -
  EH197_RS11905 (EH197_11905) - 2315810..2316397 (-) 588 WP_049218975.1 CYTH domain-containing protein -
  EH197_RS11910 (EH197_11910) - 2316602..2317267 (+) 666 WP_016181505.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69574.08 Da        Isoelectric Point: 4.5586

>NTDB_id=329527 EH197_RS11885 WP_123863983.1 2310559..2312376(+) (pepF) [Enterococcus avium strain 352]
MSEAKQLPKRQEVPIELTWDLTKIFADDAAFEEKFQALSEELSEVDKIKGTLAQGATEFLTAIEYVLDIYRKAEVIYVYA
HLKNDEDTANTTNQALYARASSLIAQVSEAVSWFEPEMLELSDQEIWAFFEKESKLELYRHFVEQIISERAHILPAEQEA
LLAGASEIFGSSADTFSIMNNADLKFPVVKNDEGEDVQLTHGVYGQLLESTNRNVREQAFKSLYSVYHQFRNTFASTLST
HVKGHNYKAKIRGYGSAREAALSGNHIPEDVYETLTLVVNQYLPLLHRYVELRKELLGLDELHMYDLYTPLLAEAPVKFS
YEEAQAKALEALKPLGEEYLEVVKKAFAERWIDVVENQGKRSGAYSSGAYDTQPYILLNWHDRLDELYTLVHEMGHSVHS
YFTRHTQPYVYGDYSIFLAEIASTTNENLLTSYLLETEKDPKIRAYIINHYLDGFKGTIFRQTQFAEFEHFIHTEDAAGN
PLTSEHLSKFYGELNMKYYGPIVVNDEEIKDEWSRIPHFYYNYYVYQYATGFSAASALAKRIVEAEPDALEKYLTYLKSG
SSDYPIEVMKKADVDMTQPTYIEDAMEIFAQRLDELEELVEVLKN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=329527 EH197_RS11885 WP_123863983.1 2310559..2312376(+) (pepF) [Enterococcus avium strain 352]
ATGAGTGAAGCAAAACAATTGCCCAAACGCCAAGAAGTTCCTATTGAGCTGACTTGGGACTTAACGAAAATTTTTGCAGA
TGATGCTGCTTTTGAGGAGAAATTCCAAGCCTTATCAGAGGAGCTATCCGAAGTTGATAAGATTAAGGGAACTTTGGCTC
AAGGTGCAACGGAATTTTTAACAGCGATTGAATATGTTTTAGATATTTATCGCAAGGCGGAGGTCATTTATGTATATGCA
CATCTAAAAAATGATGAAGATACTGCAAATACAACAAATCAAGCATTATATGCACGGGCTTCTAGCTTAATTGCACAGGT
TAGTGAAGCAGTCAGCTGGTTTGAGCCAGAAATGCTGGAGCTATCAGACCAAGAAATTTGGGCCTTTTTTGAGAAGGAAT
CCAAATTAGAGCTGTATCGCCATTTTGTTGAGCAGATCATTTCTGAGAGGGCACACATTTTACCAGCTGAACAAGAGGCG
CTGTTAGCTGGTGCTAGTGAGATTTTTGGTAGTTCTGCGGATACATTTTCTATTATGAACAATGCGGATCTGAAATTCCC
AGTTGTAAAAAATGACGAGGGTGAAGATGTTCAATTAACACATGGGGTTTATGGTCAATTATTAGAAAGTACGAACCGAA
ATGTTCGTGAACAAGCATTTAAATCCTTATATTCTGTTTATCATCAATTTCGTAACACCTTTGCTTCAACCTTGAGCACA
CATGTCAAAGGGCATAACTACAAGGCTAAGATCCGTGGATACGGCTCTGCTCGTGAAGCGGCTTTGAGCGGAAATCATAT
TCCAGAAGATGTATATGAAACATTGACTTTGGTGGTTAATCAGTATTTGCCGCTATTGCATCGATATGTTGAATTACGGA
AAGAGCTACTAGGATTAGATGAGCTGCATATGTATGATTTATATACTCCGCTTTTAGCAGAAGCGCCAGTCAAGTTTAGT
TACGAAGAAGCACAGGCTAAGGCACTTGAAGCCTTAAAGCCATTAGGTGAAGAATATCTAGAAGTTGTGAAGAAGGCTTT
TGCTGAACGCTGGATCGATGTGGTTGAAAATCAAGGTAAACGCAGTGGTGCGTATTCTTCTGGTGCTTATGATACGCAAC
CGTATATTCTTTTGAACTGGCATGATCGGCTAGATGAGCTTTATACGTTAGTTCATGAGATGGGACACAGTGTTCATAGT
TATTTCACCCGTCATACGCAGCCTTATGTTTACGGCGATTACTCGATCTTTTTAGCAGAGATTGCTTCAACAACCAATGA
AAATCTTTTAACTAGTTATCTATTAGAAACAGAAAAGGACCCAAAAATTCGTGCCTATATCATTAACCATTATTTAGATG
GATTTAAGGGAACCATTTTCCGCCAAACACAATTTGCGGAGTTTGAACACTTTATTCATACTGAAGATGCGGCTGGCAAT
CCATTGACCAGCGAACATCTAAGCAAATTCTATGGTGAATTGAATATGAAATACTATGGACCAATCGTTGTTAACGACGA
AGAAATCAAGGATGAATGGTCAAGAATCCCCCATTTTTACTATAATTATTATGTCTATCAGTATGCGACTGGCTTCTCGG
CAGCGAGTGCTTTAGCAAAACGTATTGTTGAGGCTGAACCAGACGCGTTAGAGAAATATTTGACCTACTTAAAATCGGGT
AGTAGTGATTATCCGATCGAGGTGATGAAAAAAGCCGATGTTGATATGACCCAGCCAACCTATATCGAAGACGCGATGGA
AATCTTTGCTCAAAGGTTGGATGAGTTGGAAGAGCTTGTTGAAGTGTTGAAAAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.561

97.851

0.534

Multiple sequence alignment