Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EH197_RS01065 Genome accession   NZ_CP034169
Coordinates   114285..115232 (-) Length   315 a.a.
NCBI ID   WP_016179387.1    Uniprot ID   A0AAV3J570
Organism   Enterococcus avium strain 352     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109285..120232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH197_RS01045 (EH197_01050) ltrA 110074..111462 (+) 1389 WP_137438848.1 group II intron reverse transcriptase/maturase -
  EH197_RS01050 (EH197_01055) - 111537..112502 (-) 966 WP_137438849.1 siderophore ABC transporter substrate-binding protein -
  EH197_RS01055 (EH197_01060) - 112565..113323 (-) 759 WP_137438850.1 ATP-binding cassette domain-containing protein -
  EH197_RS01060 (EH197_01065) - 113320..114288 (-) 969 WP_137438851.1 iron chelate uptake ABC transporter family permease subunit -
  EH197_RS01065 (EH197_01070) ceuB 114285..115232 (-) 948 WP_016179387.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  EH197_RS01070 (EH197_01075) - 115741..116109 (-) 369 WP_137438852.1 MerR family transcriptional regulator -
  EH197_RS01075 (EH197_01080) - 116205..116591 (+) 387 WP_137438853.1 carboxymuconolactone decarboxylase family protein -
  EH197_RS01080 (EH197_01085) - 116771..117979 (-) 1209 WP_048720069.1 IS110 family transposase -
  EH197_RS01085 (EH197_01090) - 118256..119023 (+) 768 WP_016179390.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34254.33 Da        Isoelectric Point: 9.8156

>NTDB_id=329511 EH197_RS01065 WP_016179387.1 114285..115232(-) (ceuB) [Enterococcus avium strain 352]
MRKIGILLVLFLLSALSIFIGVKDLVLQALFQGDSQQWLILATTRVPRTVSLILAGATMSICGLIMQQLTQNKFVSPTTA
GTMDSARLGILLVMLFLPNASTTVRTLAAFIFAFLGTMVFLGLSRLLPTKEPIFLPLLGVMFGNIVGSVATFFAYQFQLI
QNMSSWLQGNFSLVAKGSYELLYLTIPLFLVIYLFAYYFTIVGLGEDVAINLGVNYRLIQTLGIGLVAAASGLVLIMVGT
VPFLGVIVPNIVSLIYGDHVKQNLWITAVSGSLFLMVCDILSRIVIAPYEIPVSLTVGILGSLIFIYLLVGRKRA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=329511 EH197_RS01065 WP_016179387.1 114285..115232(-) (ceuB) [Enterococcus avium strain 352]
TTGAGAAAAATAGGGATTCTTTTGGTTTTATTTTTGTTAAGCGCTCTCTCTATTTTTATCGGAGTAAAAGATTTGGTGCT
GCAGGCTTTATTTCAAGGAGATTCACAACAGTGGCTGATTCTTGCCACTACACGTGTACCGCGTACCGTCAGCTTGATTT
TAGCAGGCGCAACGATGAGTATCTGCGGTCTGATTATGCAGCAGCTCACACAAAATAAATTCGTTTCACCAACAACTGCT
GGCACGATGGATAGTGCCCGTTTAGGAATTTTATTGGTCATGCTCTTTTTGCCTAATGCCTCTACGACTGTTCGGACTTT
GGCCGCATTTATTTTTGCCTTTCTTGGTACGATGGTTTTTCTGGGGTTAAGTCGGTTGCTCCCAACAAAGGAGCCGATTT
TTTTACCCTTATTAGGAGTAATGTTCGGTAATATTGTCGGATCAGTCGCTACCTTTTTTGCTTATCAGTTTCAGCTGATT
CAAAACATGTCGTCGTGGTTGCAGGGGAATTTTTCACTAGTGGCTAAAGGCAGCTATGAATTGCTTTATCTAACGATCCC
ACTATTTTTGGTTATCTACTTATTTGCCTATTATTTCACAATTGTTGGCTTAGGCGAAGATGTTGCCATTAATTTAGGCG
TGAATTATCGCTTGATCCAAACGCTTGGGATTGGTCTCGTTGCAGCAGCCAGCGGACTGGTTTTAATCATGGTGGGGACC
GTTCCTTTTTTAGGTGTGATCGTGCCGAATATCGTTTCGCTTATTTATGGAGATCATGTAAAGCAGAATCTATGGATTAC
CGCAGTGAGCGGCAGTCTATTTTTAATGGTCTGTGACATTCTCTCCCGCATCGTCATCGCACCATATGAGATACCAGTCA
GCTTGACGGTCGGTATTTTAGGCAGCTTAATCTTTATTTACTTATTGGTTGGGAGGAAACGTGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.839

98.73

0.492

Multiple sequence alignment