Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AYR02_RS21875 Genome accession   NZ_CP034166
Coordinates   4258424..4259053 (+) Length   209 a.a.
NCBI ID   WP_059219814.1    Uniprot ID   -
Organism   Escherichia albertii strain 2014C-4015     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4253424..4264053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR02_RS21855 - 4253816..4255576 (-) 1761 WP_095575635.1 Lon protease family protein -
  AYR02_RS21860 matP 4255762..4256214 (+) 453 WP_059219816.1 macrodomain Ter protein MatP -
  AYR02_RS21865 ompA 4256289..4257341 (-) 1053 WP_024164823.1 porin OmpA -
  AYR02_RS21870 sulA 4257697..4258206 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  AYR02_RS21875 sxy/tfoX 4258424..4259053 (+) 630 WP_059219814.1 TfoX/Sxy family DNA transformation protein Regulator
  AYR02_RS21880 yccS 4259013..4261178 (-) 2166 WP_072243494.1 YccS family putative transporter -
  AYR02_RS21885 - 4261188..4261634 (-) 447 WP_001261228.1 YccF domain-containing protein -
  AYR02_RS21890 helD 4261757..4263811 (+) 2055 WP_124783333.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24362.39 Da        Isoelectric Point: 9.2220

>NTDB_id=329508 AYR02_RS21875 WP_059219814.1 4258424..4259053(+) (sxy/tfoX) [Escherichia albertii strain 2014C-4015]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=329508 AYR02_RS21875 WP_059219814.1 4258424..4259053(+) (sxy/tfoX) [Escherichia albertii strain 2014C-4015]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTAGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895

Multiple sequence alignment