Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SUB_RS08770 Genome accession   NC_012004
Coordinates   1752994..1753707 (+) Length   237 a.a.
NCBI ID   WP_015912055.1    Uniprot ID   -
Organism   Streptococcus uberis 0140J     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747994..1758707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS08760 (SUB1762) treC 1749090..1750721 (-) 1632 WP_015912053.1 alpha,alpha-phosphotrehalase -
  SUB_RS08765 (SUB1763) treP 1750789..1752774 (-) 1986 WP_015912054.1 PTS system trehalose-specific EIIBC component -
  SUB_RS08770 (SUB1764) treR 1752994..1753707 (+) 714 WP_015912055.1 trehalose operon repressor Regulator
  SUB_RS08775 (SUB1765) - 1753726..1754052 (-) 327 WP_015912056.1 winged helix-turn-helix transcriptional regulator -
  SUB_RS08780 (SUB1766) - 1754255..1755115 (+) 861 WP_015912057.1 VOC family protein -
  SUB_RS08785 (SUB1767) yaaA 1755168..1755899 (+) 732 WP_015912058.1 peroxide stress protein YaaA -
  SUB_RS08790 (SUB1768) nrdG 1756014..1756628 (-) 615 WP_015912059.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SUB_RS08795 (SUB1769) - 1756633..1757136 (-) 504 WP_015912060.1 GNAT family N-acetyltransferase -
  SUB_RS08800 (SUB1770) - 1757105..1758085 (-) 981 WP_015912061.1 Gfo/Idh/MocA family protein -
  SUB_RS09670 (SUB1771) - 1758111..1758260 (-) 150 WP_015912062.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27637.99 Da        Isoelectric Point: 9.4778

>NTDB_id=32947 SUB_RS08770 WP_015912055.1 1752994..1753707(+) (treR) [Streptococcus uberis 0140J]
MKKYEQIYKDLESKIAKEIYKIDDFLPTEMALSVEYQASRDTIRKALTLLTKAGLVKKRQGRGTQVIKHHQILFPISELT
SYQELVTFFNMDSKTNVIAIDKLIVDNDISKLTGFQVNDIIWRVTRQRVVDGVASVLDIDYLSKKLIPTITREIAEHSLY
HYLEKDLHLDIDFALKEVTIDQVNEKDKILLDLGSDKHVVSVKSKVYLSTNEQFQFTESRHKLEKFKFVDFARRKPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=32947 SUB_RS08770 WP_015912055.1 1752994..1753707(+) (treR) [Streptococcus uberis 0140J]
ATGAAGAAATATGAACAAATTTATAAAGATTTAGAATCTAAAATCGCCAAAGAAATCTACAAAATTGACGACTTCTTACC
CACAGAAATGGCCTTAAGTGTAGAGTACCAGGCTAGTCGTGACACTATTCGAAAAGCCCTCACTCTCCTAACAAAAGCCG
GACTGGTCAAAAAACGACAAGGACGGGGTACACAAGTTATCAAGCATCATCAAATTCTTTTCCCAATTTCAGAACTGACC
AGTTACCAAGAACTCGTTACTTTTTTTAATATGGATTCCAAAACGAACGTGATTGCCATCGATAAATTAATTGTGGATAA
TGATATCTCAAAATTAACAGGTTTTCAGGTTAATGACATTATTTGGAGGGTCACACGACAAAGAGTTGTCGATGGTGTCG
CATCCGTCCTAGACATCGATTATCTCAGTAAAAAACTAATCCCTACAATAACTCGTGAAATTGCTGAACACTCCTTGTAT
CACTATCTCGAAAAAGATCTTCATCTAGACATTGACTTTGCACTGAAAGAAGTAACCATTGATCAAGTTAACGAGAAAGA
TAAAATACTTCTAGACTTAGGATCAGATAAACATGTTGTCTCTGTCAAATCCAAGGTTTATCTCTCAACTAATGAACAAT
TTCAATTTACTGAAAGTCGTCATAAACTGGAAAAATTCAAATTTGTAGATTTTGCACGAAGAAAACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671

Multiple sequence alignment