Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | BAMF_RS27290 | Genome accession | NC_014551 |
| Coordinates | 1336678..1337814 (+) | Length | 378 a.a. |
| NCBI ID | WP_088030497.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens DSM 7 = ATCC 23350 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1331678..1342814
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMF_RS27265 (BAMF_1323) | - | 1332292..1332963 (+) | 672 | WP_013351925.1 | response regulator transcription factor | - |
| BAMF_RS27270 (BAMF_1324) | - | 1332960..1334312 (+) | 1353 | WP_013351926.1 | sensor histidine kinase | - |
| BAMF_RS42210 | - | 1334541..1334600 (+) | 60 | WP_232469732.1 | hypothetical protein | - |
| BAMF_RS27275 | - | 1334739..1334930 (+) | 192 | WP_014470507.1 | hypothetical protein | - |
| BAMF_RS27280 (BAMF_1325) | - | 1335098..1335862 (-) | 765 | WP_013351927.1 | sulfite exporter TauE/SafE family protein | - |
| BAMF_RS27285 (BAMF_1326) | - | 1336006..1336473 (-) | 468 | WP_013351928.1 | DinB family protein | - |
| BAMF_RS27290 (BAMF_1327) | rapC | 1336678..1337814 (+) | 1137 | WP_088030497.1 | tetratricopeptide repeat protein | Regulator |
| BAMF_RS41225 (BAMF_1328) | - | 1337804..1337938 (+) | 135 | WP_003154881.1 | PhrA family phosphatase inhibitor | - |
| BAMF_RS27300 (BAMF_1329) | - | 1338082..1339035 (+) | 954 | WP_013351930.1 | N-acetylmuramoyl-L-alanine amidase | - |
| BAMF_RS27305 (BAMF_1330) | - | 1339073..1339450 (-) | 378 | WP_013351931.1 | PH domain-containing protein | - |
| BAMF_RS27310 (BAMF_1331) | - | 1339560..1340162 (+) | 603 | WP_013351932.1 | poly-gamma-glutamate hydrolase family protein | - |
| BAMF_RS27315 (BAMF_1332) | - | 1340305..1340895 (-) | 591 | WP_013351933.1 | ImmA/IrrE family metallo-endopeptidase | - |
| BAMF_RS27320 (BAMF_1333) | xre | 1341043..1341381 (-) | 339 | WP_013351934.1 | HTH-type transcriptional regulator Xre | - |
| BAMF_RS27325 (BAMF_1334) | - | 1341572..1341751 (+) | 180 | WP_013351935.1 | hypothetical protein | - |
| BAMF_RS27330 (BAMF_1335) | - | 1341741..1342568 (+) | 828 | WP_014470504.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 45044.33 Da Isoelectric Point: 5.0536
>NTDB_id=32945 BAMF_RS27290 WP_088030497.1 1336678..1337814(+) (rapC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI
Nucleotide
Download Length: 1137 bp
>NTDB_id=32945 BAMF_RS27290 WP_088030497.1 1336678..1337814(+) (rapC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTCTTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCACGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCTGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTTACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTCTTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCACGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCTGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTTACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
44.415 |
99.471 |
0.442 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
42.48 |
100 |
0.426 |