Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SUB_RS08370 Genome accession   NC_012004
Coordinates   1661146..1662513 (-) Length   455 a.a.
NCBI ID   WP_015911975.1    Uniprot ID   B9DVX0
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1656146..1667513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS08345 - 1656513..1656884 (-) 372 WP_155105292.1 hypothetical protein -
  SUB_RS08350 - 1656901..1657536 (-) 636 WP_041817692.1 hypothetical protein -
  SUB_RS08355 (SUB1679) gltX 1657952..1659397 (-) 1446 WP_015911972.1 glutamate--tRNA ligase -
  SUB_RS08360 (SUB1680) - 1659581..1660294 (-) 714 WP_015911973.1 TIGR00266 family protein -
  SUB_RS08365 (SUB1681) - 1660489..1660986 (-) 498 WP_015911974.1 beta-class carbonic anhydrase -
  SUB_RS08370 (SUB1682) radA 1661146..1662513 (-) 1368 WP_015911975.1 DNA repair protein RadA Machinery gene
  SUB_RS08375 (SUB1683) - 1662561..1663007 (-) 447 WP_015911976.1 dUTP diphosphatase -
  SUB_RS08380 (SUB1684) - 1663122..1663481 (-) 360 WP_015911977.1 YbaN family protein -
  SUB_RS08385 (SUB1685) - 1663670..1664272 (+) 603 WP_015911978.1 NADPH-dependent FMN reductase -
  SUB_RS08390 (SUB1686) - 1664291..1665538 (+) 1248 WP_015911979.1 NAD(P)H-dependent oxidoreductase -
  SUB_RS08395 (SUB1687) - 1665815..1666336 (+) 522 WP_015911980.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49734.21 Da        Isoelectric Point: 6.3763

>NTDB_id=32945 SUB_RS08370 WP_015911975.1 1661146..1662513(-) (radA) [Streptococcus uberis 0140J]
MAKKKATYVCQECGYQSPKYLGRCPNCSAWSSFIEEVEVKEVKNARVSLTGEKSRPVKLKDVDNINYARTKTDMEEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIE
KIAPDFLIIDSIQTIMSPEIQGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRISLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEMPTNPQEAFLGEIGLTGEIR
RVTRMEQRINEAAKLGFTKIYAPKNALHGIDIPKGIQVVGVTTVGEVLKAVFSKA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=32945 SUB_RS08370 WP_015911975.1 1661146..1662513(-) (radA) [Streptococcus uberis 0140J]
ATGGCTAAAAAGAAAGCGACATATGTTTGTCAGGAGTGTGGCTATCAATCCCCCAAATACCTTGGCAGATGTCCTAATTG
CTCAGCTTGGTCTTCTTTTATAGAAGAGGTTGAGGTGAAAGAGGTAAAAAATGCGCGTGTGAGTTTGACTGGGGAGAAAA
GTAGACCTGTAAAGCTTAAAGATGTTGATAACATCAATTACGCCCGAACTAAGACGGATATGGAGGAGTTTAACCGAGTT
CTTGGTGGTGGTGTCGTACCAGGCAGTTTAATCTTAATAGGTGGCGATCCGGGCATTGGAAAATCTACTTTATTATTACA
AGTGTCCACACAATTAGCAAATAAGGGAACAGTCTTGTATGTATCTGGCGAAGAATCAGCCGAACAAATTAAGTTAAGAA
GTGAGCGTTTAGGTGATATTGATAATGAATTTTACCTTTATGCTGAAACCAATATGCAGAGCATTCGTTCAGAAATCGAA
AAAATAGCACCTGATTTTTTGATTATAGACTCTATTCAAACCATCATGAGTCCAGAGATTCAAGGTGTTCAGGGATCTGT
TAGTCAGGTCCGTGAAGTGACAGCTGAATTAATGCAATTGGCTAAAACGAATAATATAGCGACTTTCATTGTGGGTCATG
TCACAAAGGAAGGAACAATTGCTGGCCCACGGATGCTTGAACATATGGTTGACACTGTTCTTTATTTTGAAGGTGAAAGG
CATCATACCTTCCGAATTTTGAGGGCAGTTAAAAATCGATTCGGCTCTACAAATGAAATTGGTATTTTTGAAATGCAGTC
AGGTGGTCTGGTTGAAGTTCTCAATCCGAGTCAAGTGTTTTTAGAAGAACGCTTGGATGGCGCCACAGGTTCTGCCATTG
TCGTTACTATGGAAGGCAGTCGTCCGATTTTGGCTGAGGTTCAATCTTTAGTTACGCCTACCGTTTTTGGAAATGCCAGA
AGAACGACCACAGGTCTTGATTTTAACAGAATTAGCTTGATTATGGCTGTTTTAGAAAAACGGTGTGGTCTTTTATTACA
AAATCAAGATGCCTATCTGAAGTCAGCTGGTGGGGTTAAGTTAGATGAACCTGCTATCGATTTAGCTGTCGCAGTAGCCA
TTGCCTCTAGCTACAAAGAAATGCCGACAAACCCCCAAGAAGCCTTTTTAGGTGAAATTGGGCTGACAGGTGAAATCAGA
AGGGTAACTCGAATGGAACAAAGAATCAACGAAGCGGCTAAATTAGGCTTTACAAAAATTTATGCCCCCAAAAATGCATT
ACATGGTATTGATATTCCCAAAGGGATTCAAGTTGTAGGGGTCACAACCGTCGGTGAGGTTTTAAAGGCAGTATTTTCCA
AAGCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(55-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DVX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

87.417

99.56

0.87
  radA Streptococcus pneumoniae D39

87.417

99.56

0.87
  radA Streptococcus pneumoniae R6

87.417

99.56

0.87
  radA Streptococcus pneumoniae TIGR4

87.417

99.56

0.87
  radA Streptococcus mitis NCTC 12261

87.417

99.56

0.87
  radA Streptococcus mitis SK321

87.196

99.56

0.868
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

99.56

0.609

Multiple sequence alignment