Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   EAL91_RS02760 Genome accession   NZ_CP034147
Coordinates   566912..568120 (-) Length   402 a.a.
NCBI ID   WP_121054641.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 561912..573120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS02735 - 561958..562476 (-) 519 WP_121054637.1 replication regulatory RepB family protein -
  EAL91_RS02740 - 562473..563417 (-) 945 WP_121054638.1 CpaF/VirB11 family protein -
  EAL91_RS02745 - 563422..563697 (-) 276 WP_121054639.1 hypothetical protein -
  EAL91_RS02750 - 563714..564675 (-) 962 Protein_518 hypothetical protein -
  EAL91_RS02755 - 564688..566928 (-) 2241 WP_121054640.1 collagen-like protein -
  EAL91_RS02760 comB10 566912..568120 (-) 1209 WP_121054641.1 DNA type IV secretion system protein ComB10 Machinery gene
  EAL91_RS02765 - 568117..569772 (-) 1656 WP_121054642.1 TrbG/VirB9 family P-type conjugative transfer protein -
  EAL91_RS02770 - 569769..570905 (-) 1137 WP_121054643.1 VirB8/TrbF family protein -
  EAL91_RS08375 - 570898..571038 (-) 141 WP_121054644.1 type IV secretion system protein VirB7 -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 44889.44 Da        Isoelectric Point: 9.9914

>NTDB_id=329352 EAL91_RS02760 WP_121054641.1 566912..568120(-) (comB10) [Helicobacter pylori strain HP14039]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLGQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=329352 EAL91_RS02760 WP_121054641.1 566912..568120(-) (comB10) [Helicobacter pylori strain HP14039]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACAGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAGGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(178-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.284

98.01

0.512

Multiple sequence alignment