Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SUB_RS06175 Genome accession   NC_012004
Coordinates   1220096..1221904 (-) Length   602 a.a.
NCBI ID   WP_041817637.1    Uniprot ID   -
Organism   Streptococcus uberis 0140J     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215096..1226904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS06155 (SUB1231) prsA 1216195..1217139 (-) 945 WP_012658706.1 peptidylprolyl isomerase PrsA -
  SUB_RS06160 (SUB1232) - 1217202..1217909 (-) 708 WP_012658707.1 O-methyltransferase -
  SUB_RS06165 (SUB1233) - 1218049..1219278 (-) 1230 WP_012658708.1 L-lactate MFS transporter -
  SUB_RS06170 (SUB1234) - 1219403..1220044 (-) 642 WP_012658709.1 HAD family hydrolase -
  SUB_RS06175 (SUB1235) pepF 1220096..1221904 (-) 1809 WP_041817637.1 oligoendopeptidase F Regulator
  SUB_RS06180 (SUB1236) - 1221921..1222865 (-) 945 WP_012658711.1 competence protein CoiA -
  SUB_RS06185 (SUB1237) - 1222941..1224086 (-) 1146 WP_012658712.1 MFS transporter -
  SUB_RS06190 (SUB1238) - 1224172..1224888 (-) 717 WP_041817639.1 pseudouridine synthase -
  SUB_RS06195 (SUB1239) nagB 1224954..1225658 (-) 705 WP_012658714.1 glucosamine-6-phosphate deaminase -
  SUB_RS06200 (SUB1240) queA 1225839..1226867 (+) 1029 WP_012658715.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 70281.34 Da        Isoelectric Point: 4.7013

>NTDB_id=32931 SUB_RS06175 WP_041817637.1 1220096..1221904(-) (pepF) [Streptococcus uberis 0140J]
MTDQASQIEEKYTWDLSTIYHSDEDWESDFEQVSKEVEAAKSFAGHLLDSSQQLLEITEVELNLARRIEKLYVYAHMKND
QDTRVSKYQAYYAKASGLYALFSEVFSFYEPELMTISEEELAEFFKEEEGLELYRHFFERLLKNKSHVLSQLEEELLAGA
QEIFNGAEETFSVLDNADILFPVIRDENHQEVEITHGNFIHLMESKNRNVRQSAYEALYSTYQQFQHTYAKTLQTNVKVQ
NYKARVHHYDSARQAAMSANFIPEKVYDTLIEEVNNHLPLLHRYLKLRQEVLGLDSLKMYDVYTPLSEMTMTLSYDEALE
KVEKVLKIFGTEYSDIVHQAFTERWIDVQVKKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLIHETGHSLHSALTRKY
QPYVYGDYSIFLAEIASTTNENILTEALLNDVEDEKQRFTILNHYLDGFRGTIFRQTQFAEFEHAVHLADQNGEVLTSDY
LNHLYADLNEKYYNLPKEENSFIQYEWARIPHFYYNYYVYQYATGFAAANYLAHQVVHGSDEDKENYLNYLKSGNSDYPL
NVIKKAGVDMTDGTYLKAAFKVFEARLNELEELVEKGVHLKA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=32931 SUB_RS06175 WP_041817637.1 1220096..1221904(-) (pepF) [Streptococcus uberis 0140J]
ATGACAGATCAAGCAAGTCAAATAGAAGAAAAGTATACATGGGATTTAAGTACCATTTATCACAGTGATGAAGACTGGGA
AAGTGATTTTGAACAAGTAAGTAAGGAGGTGGAAGCAGCAAAAAGTTTCGCTGGACACCTACTGGATTCAAGTCAACAAT
TATTAGAAATTACTGAAGTAGAACTGAATTTGGCAAGACGTATTGAAAAACTTTATGTTTATGCTCATATGAAAAATGAT
CAGGATACAAGAGTATCAAAATACCAAGCCTATTATGCTAAGGCATCTGGGCTTTATGCTTTATTTAGTGAAGTTTTCTC
ATTTTATGAGCCTGAATTGATGACGATTTCAGAGGAAGAATTAGCAGAATTCTTCAAAGAGGAAGAAGGTCTAGAATTAT
ACCGACATTTTTTTGAGCGTTTATTAAAAAATAAGTCCCATGTTCTCTCTCAATTAGAAGAAGAGTTATTAGCGGGTGCC
CAGGAAATTTTTAATGGTGCTGAGGAAACATTTAGTGTTCTTGACAATGCCGATATTCTCTTTCCAGTGATTAGAGACGA
AAATCATCAAGAGGTTGAAATTACTCATGGCAATTTCATTCATTTAATGGAATCTAAAAATCGTAATGTCAGACAGTCTG
CCTATGAGGCACTTTATTCAACTTACCAACAATTCCAACATACCTATGCCAAGACACTACAAACCAATGTGAAAGTACAA
AACTACAAAGCTCGTGTTCATCACTATGACTCAGCCCGTCAGGCAGCTATGTCTGCCAACTTTATTCCTGAAAAGGTCTA
TGATACTCTTATTGAAGAAGTGAACAATCACTTGCCTTTATTGCACCGTTATTTGAAATTGCGACAAGAAGTACTTGGTT
TAGATAGCTTGAAAATGTACGATGTTTACACTCCATTATCAGAAATGACGATGACATTAAGCTATGATGAGGCTTTGGAA
AAAGTTGAAAAAGTTCTTAAAATCTTTGGAACAGAATACAGTGATATTGTGCATCAAGCATTTACTGAACGATGGATAGA
TGTCCAGGTCAAGAAAGGTAAAAGATCAGGAGCTTATTCAGGTGGCTCTTACGATACCAATGCCTTTATGTTATTAAATT
GGCAAGATAATCTAGACAACTTGTTTACCTTAATTCATGAAACAGGTCACAGTTTGCATTCGGCTTTAACACGTAAATAT
CAACCATATGTATATGGTGACTATAGTATCTTCTTAGCAGAAATTGCCTCAACTACAAATGAGAATATTTTAACAGAGGC
ACTCTTAAATGATGTTGAAGACGAAAAACAACGTTTCACTATTTTAAATCATTATTTAGATGGCTTTAGAGGAACCATTT
TCCGTCAGACACAGTTTGCAGAATTTGAACATGCGGTTCATCTTGCTGACCAAAATGGGGAAGTTTTGACCAGTGATTAC
CTCAATCATCTTTATGCTGATCTAAATGAAAAATACTATAATCTTCCGAAAGAAGAAAATAGTTTTATTCAGTACGAATG
GGCAAGGATACCACATTTTTACTATAATTATTATGTTTATCAATATGCTACTGGCTTCGCTGCAGCAAATTATTTAGCTC
ATCAAGTGGTTCATGGTAGCGATGAAGATAAAGAAAATTACCTCAATTATTTAAAATCTGGAAACTCGGATTATCCACTT
AATGTTATCAAAAAAGCAGGAGTGGATATGACAGATGGAACTTATCTAAAAGCAGCTTTTAAAGTTTTTGAAGCTCGACT
GAATGAGCTAGAAGAATTAGTTGAAAAAGGGGTTCATCTTAAGGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.167

99.668

0.689

Multiple sequence alignment