Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EGM68_RS21925 Genome accession   NZ_CP034141
Coordinates   4986944..4987897 (-) Length   317 a.a.
NCBI ID   WP_129550005.1    Uniprot ID   -
Organism   Paenibacillus sp. M-152     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4981944..4992897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM68_RS21900 (EGM68_21900) - 4982413..4983324 (-) 912 WP_129550002.1 aldo/keto reductase -
  EGM68_RS21905 (EGM68_21905) - 4983482..4984225 (-) 744 WP_129550003.1 alpha/beta hydrolase-fold protein -
  EGM68_RS21910 (EGM68_21910) - 4984259..4985239 (-) 981 WP_129550004.1 siderophore ABC transporter substrate-binding protein -
  EGM68_RS21915 (EGM68_21915) - 4985252..4986010 (-) 759 WP_013373133.1 ABC transporter ATP-binding protein -
  EGM68_RS21920 (EGM68_21920) - 4986004..4986954 (-) 951 WP_017425553.1 iron chelate uptake ABC transporter family permease subunit -
  EGM68_RS21925 (EGM68_21925) ceuB 4986944..4987897 (-) 954 WP_129550005.1 ABC transporter permease Machinery gene
  EGM68_RS21930 (EGM68_21930) - 4988158..4988835 (+) 678 WP_129550006.1 response regulator transcription factor -
  EGM68_RS21935 (EGM68_21935) - 4988836..4989756 (+) 921 WP_058711511.1 HAMP domain-containing sensor histidine kinase -
  EGM68_RS21940 (EGM68_21940) - 4989864..4990541 (+) 678 WP_058711512.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=329307 EGM68_RS21925 WP_129550005.1 4986944..4987897(-) (ceuB) [Paenibacillus sp. M-152]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=329307 EGM68_RS21925 WP_129550005.1 4986944..4987897(-) (ceuB) [Paenibacillus sp. M-152]
ATGAAATTGCGCTATTTAATATTAGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATTATGCAGCAGCTTACCCGAAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTCATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGTCTGATGTTTGGGGGCATTTTAAATTCGGTGACGACTTTTTTTGCCTACAAATATAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTATATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTTGGTACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment