Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EGM68_RS12405 Genome accession   NZ_CP034141
Coordinates   2765324..2767174 (+) Length   616 a.a.
NCBI ID   WP_129549278.1    Uniprot ID   A0A3G8R6Q4
Organism   Paenibacillus sp. M-152     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2760324..2772174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM68_RS12380 (EGM68_12380) rpsN 2760560..2760829 (+) 270 WP_025678316.1 30S ribosomal protein S14 -
  EGM68_RS12385 (EGM68_12385) - 2761108..2762118 (+) 1011 WP_129549276.1 GTP-binding protein -
  EGM68_RS26075 - 2762135..2762566 (+) 432 WP_240664160.1 GTP cyclohydrolase, FolE2/MptA family -
  EGM68_RS12395 (EGM68_12395) - 2763081..2763488 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  EGM68_RS12400 (EGM68_12400) rcrP 2763568..2765337 (+) 1770 WP_129549277.1 ABC transporter ATP-binding protein Regulator
  EGM68_RS12405 (EGM68_12405) rcrQ 2765324..2767174 (+) 1851 WP_129549278.1 ABC transporter ATP-binding protein Regulator
  EGM68_RS12410 (EGM68_12410) - 2767392..2767892 (-) 501 WP_165264017.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  EGM68_RS12420 (EGM68_12420) - 2768127..2768609 (-) 483 WP_129549281.1 MarR family transcriptional regulator -
  EGM68_RS26080 - 2768950..2769764 (+) 815 Protein_2383 FAD-dependent oxidoreductase -
  EGM68_RS26385 - 2769870..2770016 (+) 147 WP_276311738.1 hypothetical protein -
  EGM68_RS12440 (EGM68_12440) - 2770367..2771173 (+) 807 WP_129549285.1 MerR family transcriptional regulator -
  EGM68_RS12445 (EGM68_12445) - 2771271..2771540 (+) 270 WP_240664161.1 YetF domain-containing protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68104.89 Da        Isoelectric Point: 6.4067

>NTDB_id=329296 EGM68_RS12405 WP_129549278.1 2765324..2767174(+) (rcrQ) [Paenibacillus sp. M-152]
MDKNEHTVDSEHIKMKQQGPMGKGPTEGMGTGKKANDFKKNIRQLLSYIKACAPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDINAIQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSQKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLDEEELKDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKVAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSQDHVTD
EQVEAACRAVGLHNFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=329296 EGM68_RS12405 WP_129549278.1 2765324..2767174(+) (rcrQ) [Paenibacillus sp. M-152]
ATGGACAAGAATGAACACACCGTCGACAGTGAGCATATCAAAATGAAACAGCAAGGTCCCATGGGTAAAGGTCCTACGGA
GGGGATGGGGACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATCCGTCAGCTCTTATCCTACATCAAGGCCTGTGCGC
CTATGATTATCCTCTCTATGGTGCTGGCACTGGCCGGTTCCGTCTTCAATGTGATTGGTCCGGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATTGTAACAGGGATTGATATAAATGCTATTCAGAAGATTGTTCTTGTACTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGCCTTACAAAGAAGATGC
GGACAGAACTGTCCCAAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTCAGCCGT
GTGACTAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACACTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTGTATACGAACTGGATCATGACCATTACCGGGATTGTAGCTACGCTGATTGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAAAAATATTTTGTAGCACAGCAAGCAGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTAGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTATTTACACAGCCCTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTCGAATTTCTGGATGAAGAAGAATTGAAAGATGAAAGTGACAAGACCATGAAGCTAGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAGTCGCCATTGTTGGCCCGACAGGTGCTGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GTATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCCAAGACCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCACAACTTCCTTAAAACTCTGCCGCAGGGCTATGATACAGTACT
AGACGACAAAGCCAATCTCTCTGCTGGCCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCTATGC
TCATACTGGACGAAGCCACAAGTTCGGTCGATACGCGTACGGAGTTGCTGATTCAACAAGCGATGGACCGACTTACTGTA
GGGAAAACCTCTTTTGTGATTGCCCATCGTCTCTCAACGATTAAGAACGCCGATCTGATATTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGAGGAATTGCTGGGTAAAGGCGGATTCTATGCCGATTTATATAACAGCCAGTTTGAAC
ATGCATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8R6Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.979

93.669

0.524

Multiple sequence alignment