Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FN958_RS06515 Genome accession   NZ_CP041996
Coordinates   1312357..1313094 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AR Bank #0349     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307357..1318094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN958_RS06490 (FN958_06490) tyrA 1307731..1308852 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FN958_RS06495 (FN958_06495) pheA 1308895..1310055 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  FN958_RS06500 (FN958_06500) pheL 1310154..1310201 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FN958_RS06505 (FN958_06505) raiA 1310305..1310646 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FN958_RS06510 (FN958_06510) - 1310907..1312253 (-) 1347 WP_024179531.1 IS4-like element IS4 family transposase -
  FN958_RS06515 (FN958_06515) comL 1312357..1313094 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FN958_RS06520 (FN958_06520) rluD 1313229..1314209 (+) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FN958_RS06525 (FN958_06525) yfiH 1314206..1314937 (+) 732 WP_000040134.1 purine nucleoside phosphorylase YfiH -
  FN958_RS06530 (FN958_06530) clpC 1315067..1317640 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=329296 FN958_RS06515 WP_000197686.1 1312357..1313094(-) (comL) [Escherichia coli strain AR Bank #0349]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=329296 FN958_RS06515 WP_000197686.1 1312357..1313094(-) (comL) [Escherichia coli strain AR Bank #0349]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment