Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EGM68_RS12400 Genome accession   NZ_CP034141
Coordinates   2763568..2765337 (+) Length   589 a.a.
NCBI ID   WP_129549277.1    Uniprot ID   -
Organism   Paenibacillus sp. M-152     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2758568..2770337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM68_RS12370 (EGM68_12370) - 2759110..2759913 (+) 804 WP_129549275.1 ATP-binding protein -
  EGM68_RS12375 (EGM68_12375) - 2760267..2760530 (+) 264 WP_240664159.1 deoxycytidine triphosphate deaminase -
  EGM68_RS12380 (EGM68_12380) rpsN 2760560..2760829 (+) 270 WP_025678316.1 30S ribosomal protein S14 -
  EGM68_RS12385 (EGM68_12385) - 2761108..2762118 (+) 1011 WP_129549276.1 GTP-binding protein -
  EGM68_RS26075 - 2762135..2762566 (+) 432 WP_240664160.1 GTP cyclohydrolase, FolE2/MptA family -
  EGM68_RS12395 (EGM68_12395) - 2763081..2763488 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  EGM68_RS12400 (EGM68_12400) rcrP 2763568..2765337 (+) 1770 WP_129549277.1 ABC transporter ATP-binding protein Regulator
  EGM68_RS12405 (EGM68_12405) rcrQ 2765324..2767174 (+) 1851 WP_129549278.1 ABC transporter ATP-binding protein Regulator
  EGM68_RS12410 (EGM68_12410) - 2767392..2767892 (-) 501 WP_165264017.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  EGM68_RS12420 (EGM68_12420) - 2768127..2768609 (-) 483 WP_129549281.1 MarR family transcriptional regulator -
  EGM68_RS26080 - 2768950..2769764 (+) 815 Protein_2383 FAD-dependent oxidoreductase -
  EGM68_RS26385 - 2769870..2770016 (+) 147 WP_276311738.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65018.20 Da        Isoelectric Point: 6.7636

>NTDB_id=329295 EGM68_RS12400 WP_129549277.1 2763568..2765337(+) (rcrP) [Paenibacillus sp. M-152]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMSASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWIGTYLINGAAVPDRITLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFSAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRSEASEKLVKAAVGIAQGTEFVEKMDGQYEGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNDT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=329295 EGM68_RS12400 WP_129549277.1 2763568..2765337(+) (rcrP) [Paenibacillus sp. M-152]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAGATTACAACCAAGCTGCAAACCGCAGGAACGCCGATGTCGGAAC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGAGTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATTGCGGATAAAAACTGGCAGTGGACTGCCTCT
ACAGGAGTGGCTGTGGCTGTTCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTCGGGCAGGCTAATGCCGAATTGACGAATACAAACCTGTTTGCAAACCGGTTAATGGCAATG
GTTGGCCCGGGTATGACCTTTATTATGTCGGGTCTGAGTGTCTCAATCTATTGGATTGGCACTTACCTGATTAACGGAGC
GGCCGTGCCGGACCGCATTACGCTATTCTCTAATATGGTCGTATTCTCCTCATATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCTCGCATCATCGACGGACATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGATGCGGAGGAACCTGTGCTTCGCAACATTAGCTTTTCGGCAAAACAGGGCGAGACAGTTGCCTTTATTGGCG
CAACAGGCAGCGGCAAAACCAGCGTAATCAATCTGATTTCCCGTTTCTACGATGTGACTGAGGGAGAGGTGCTTGTGGAT
GGCGTGAATGTCAGAAATTATAAGCAGCAGACACTTCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCGTCCAACGTTTCGTATGGCGATAACGGAAGGTCAGAAGCATCGGAGAAACTCGTCAAAGCCGCCGTGG
GGATTGCCCAAGGTACGGAGTTTGTTGAAAAAATGGACGGTCAGTATGAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAACGTCTGTCCATAGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTCGATGATTCCTT
CTCGGCACTGGACTACAGAACAGACCGGATTCTGCGCTCCGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATAAAGGACGCTGACCGCATTATCGTACTGGACCAGGGCGAGATTGTAGGAAACGACACA
CATGAAGAGCTGATGGCGAATTGTAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.667

100

0.526

Multiple sequence alignment