Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FN958_RS06205 Genome accession   NZ_CP041996
Coordinates   1253252..1253767 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain AR Bank #0349     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248252..1258767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN958_RS06155 (FN958_06155) csrA 1248992..1249177 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FN958_RS06190 (FN958_06190) yqaB 1250482..1251048 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FN958_RS06195 (FN958_06195) yqaA 1251045..1251473 (+) 429 WP_001287454.1 YqaA family protein -
  FN958_RS06200 (FN958_06200) gshA 1251546..1253102 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  FN958_RS06205 (FN958_06205) luxS 1253252..1253767 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  FN958_RS06210 (FN958_06210) emrB 1253831..1255369 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FN958_RS06215 (FN958_06215) emrA 1255386..1256558 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FN958_RS06220 (FN958_06220) emrR 1256685..1257215 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FN958_RS06225 (FN958_06225) ygaH 1257306..1257641 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  FN958_RS06230 (FN958_06230) ygaZ 1257631..1258368 (-) 738 WP_000445648.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=329294 FN958_RS06205 WP_001130208.1 1253252..1253767(+) (luxS) [Escherichia coli strain AR Bank #0349]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=329294 FN958_RS06205 WP_001130208.1 1253252..1253767(+) (luxS) [Escherichia coli strain AR Bank #0349]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737