Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BME36_RS17630 Genome accession   NZ_CP034136
Coordinates   3442857..3443453 (-) Length   198 a.a.
NCBI ID   WP_064189316.1    Uniprot ID   A0AAE4SGA6
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain G747     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437857..3448453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BME36_RS17615 (BME36_017615) helD 3438068..3440122 (-) 2055 WP_004201438.1 DNA helicase IV -
  BME36_RS17620 (BME36_017620) - 3440247..3440693 (+) 447 WP_004201437.1 YccF domain-containing protein -
  BME36_RS17625 (BME36_017625) yccS 3440711..3442846 (+) 2136 WP_004201435.1 YccS family putative transporter -
  BME36_RS17630 (BME36_017630) sxy/tfoX 3442857..3443453 (-) 597 WP_064189316.1 TfoX/Sxy family DNA transformation protein Regulator
  BME36_RS30990 - 3443471..3443776 (-) 306 WP_162574834.1 hypothetical protein -
  BME36_RS17640 (BME36_017640) sulA 3443802..3444311 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  BME36_RS17645 (BME36_017645) ompA 3444664..3445734 (+) 1071 WP_002898408.1 porin OmpA -
  BME36_RS17650 (BME36_017650) matP 3445929..3446381 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  BME36_RS17655 (BME36_017655) - 3446567..3448324 (+) 1758 WP_064189317.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22557.28 Da        Isoelectric Point: 10.1332

>NTDB_id=329272 BME36_RS17630 WP_064189316.1 3442857..3443453(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain G747]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRQGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=329272 BME36_RS17630 WP_064189316.1 3442857..3443453(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain G747]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACAGGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment