Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FPT06_RS08010 Genome accession   NZ_CP041994
Coordinates   1582799..1584460 (+) Length   553 a.a.
NCBI ID   WP_009910555.1    Uniprot ID   A0A0H3MWL5
Organism   Streptococcus suis strain INT-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1577799..1589460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS07980 (FPT06_07980) - 1578085..1578993 (-) 909 WP_013730499.1 neutral zinc metallopeptidase -
  FPT06_RS07985 (FPT06_07985) xseA 1579162..1580505 (+) 1344 WP_013730498.1 exodeoxyribonuclease VII large subunit -
  FPT06_RS07990 (FPT06_07990) - 1580480..1580695 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  FPT06_RS07995 (FPT06_07995) - 1580695..1581564 (+) 870 WP_009910557.1 polyprenyl synthetase family protein -
  FPT06_RS08000 (FPT06_08000) - 1581557..1582378 (+) 822 WP_009910556.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  FPT06_RS08005 (FPT06_08005) - 1582371..1582796 (+) 426 WP_002936261.1 arginine repressor -
  FPT06_RS08010 (FPT06_08010) recN 1582799..1584460 (+) 1662 WP_009910555.1 DNA repair protein RecN Machinery gene
  FPT06_RS08015 (FPT06_08015) - 1584554..1585387 (+) 834 WP_002936253.1 DegV family protein -
  FPT06_RS08020 (FPT06_08020) - 1585380..1586213 (+) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  FPT06_RS08025 (FPT06_08025) - 1586185..1586781 (+) 597 WP_002936249.1 YpmS family protein -
  FPT06_RS08030 (FPT06_08030) - 1586871..1587146 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  FPT06_RS08040 (FPT06_08040) - 1587543..1588010 (+) 468 WP_009910549.1 GNAT family N-acetyltransferase -
  FPT06_RS08045 (FPT06_08045) - 1588032..1589291 (-) 1260 WP_013730496.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62761.97 Da        Isoelectric Point: 4.6542

>NTDB_id=329253 FPT06_RS08010 WP_009910555.1 1582799..1584460(+) (recN) [Streptococcus suis strain INT-01]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDITKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=329253 FPT06_RS08010 WP_009910555.1 1582799..1584460(+) (recN) [Streptococcus suis strain INT-01]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAAATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGCCGTGAAATCCTGCAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGGGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATATAACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCAG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATTTCTACCAACCCAGGTGAAGACTTCAAACCACTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTTATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MWL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45