Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BME54_RS17985 Genome accession   NZ_CP034129
Coordinates   3494005..3494601 (-) Length   198 a.a.
NCBI ID   WP_064189316.1    Uniprot ID   A0AAE4SGA6
Organism   Klebsiella quasipneumoniae strain G4584     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3489005..3499601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BME54_RS17970 (BME54_17970) helD 3489216..3491270 (-) 2055 WP_004201438.1 DNA helicase IV -
  BME54_RS17975 (BME54_17975) - 3491395..3491841 (+) 447 WP_004201437.1 YccF domain-containing protein -
  BME54_RS17980 (BME54_17980) yccS 3491859..3493994 (+) 2136 WP_004201435.1 YccS family putative transporter -
  BME54_RS17985 (BME54_17985) sxy/tfoX 3494005..3494601 (-) 597 WP_064189316.1 TfoX/Sxy family DNA transformation protein Regulator
  BME54_RS17995 (BME54_17995) sulA 3494950..3495459 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  BME54_RS18000 (BME54_18000) ompA 3495812..3496882 (+) 1071 WP_002898408.1 porin OmpA -
  BME54_RS18005 (BME54_18005) matP 3497077..3497529 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  BME54_RS18010 (BME54_18010) - 3497715..3499472 (+) 1758 WP_064189317.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22557.28 Da        Isoelectric Point: 10.1332

>NTDB_id=329248 BME54_RS17985 WP_064189316.1 3494005..3494601(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain G4584]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRQGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=329248 BME54_RS17985 WP_064189316.1 3494005..3494601(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain G4584]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACAGGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment