Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EIB18_RS08850 Genome accession   NZ_CP034122
Coordinates   1857528..1858910 (-) Length   460 a.a.
NCBI ID   WP_096033240.1    Uniprot ID   -
Organism   Caulobacter vibrioides strain CB2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852528..1863910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIB18_RS08830 (EIB18_08830) - 1853578..1854333 (-) 756 WP_010919529.1 SDR family NAD(P)-dependent oxidoreductase -
  EIB18_RS08835 (EIB18_08835) - 1854382..1855368 (-) 987 WP_096033239.1 bile acid:sodium symporter family protein -
  EIB18_RS08840 (EIB18_08840) purF 1855415..1856917 (-) 1503 WP_010919531.1 amidophosphoribosyltransferase -
  EIB18_RS08845 (EIB18_08845) - 1856914..1857531 (-) 618 WP_010919532.1 CvpA family protein -
  EIB18_RS08850 (EIB18_08850) radA 1857528..1858910 (-) 1383 WP_096033240.1 DNA repair protein RadA Machinery gene
  EIB18_RS08855 (EIB18_08855) alr 1858984..1860078 (-) 1095 WP_096033241.1 alanine racemase -
  EIB18_RS08860 (EIB18_08860) - 1860118..1860804 (-) 687 WP_096033242.1 MarC family protein -
  EIB18_RS08865 (EIB18_08865) - 1861684..1863207 (-) 1524 WP_010919538.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47742.64 Da        Isoelectric Point: 5.3809

>NTDB_id=329205 EIB18_RS08850 WP_096033240.1 1857528..1858910(-) (radA) [Caulobacter vibrioides strain CB2A]
MARDGAVYACQSCGAVQTKWSGQCSACQSWNTLVEEVSAKPPGALSATKATRVRGLQFTGLESETAPPPRILTGVDEFDR
VCGGGVVPGSALLIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLAKANVSLAAETALRDILDG
LKRDNFDLVVIDSIQTLWSDAHEAGPGTVTQVRACATELVRLAKKKGVAILLVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVAPSAYGT
PRRAVVGWDSGRLAMVLAVLEARCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSALDVALPQDCVVFGELSLSGE
VRPVSRMETRLKEAAKLGFDRALGPLAGLPEGGGALPVAGVARLTDAVRRIGDEIWTSLT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=329205 EIB18_RS08850 WP_096033240.1 1857528..1858910(-) (radA) [Caulobacter vibrioides strain CB2A]
ATGGCCCGCGACGGCGCCGTTTACGCCTGCCAGTCCTGTGGCGCGGTCCAGACCAAGTGGTCGGGACAGTGCTCGGCCTG
CCAAAGCTGGAACACCCTGGTCGAGGAGGTCAGCGCCAAGCCGCCGGGAGCCCTGTCGGCGACCAAGGCCACCCGCGTGC
GCGGCCTGCAGTTCACGGGCCTGGAAAGCGAGACCGCGCCCCCGCCCCGCATCCTGACCGGCGTCGACGAGTTCGACCGT
GTGTGCGGCGGCGGCGTGGTGCCGGGTTCAGCGCTGCTGATCGGCGGCGATCCGGGCGTGGGCAAGTCCACCCTGCTGCT
GCAGGTCTGCGCCAGCGCCGCCGCGCGCGGCGTCTCCTGCGCCTATATCTCCGGCGAAGAGGCCGTGGAGCAGATCCGGG
GCCGCGCCGACCGCATGGGTCTGGCCAAGGCCAATGTCAGCCTGGCCGCCGAAACCGCGCTGCGTGACATCCTCGATGGC
CTCAAGCGCGACAACTTCGACCTCGTGGTTATCGACTCGATCCAGACGCTGTGGAGCGACGCCCACGAGGCCGGTCCCGG
CACCGTCACCCAGGTCCGCGCCTGCGCCACCGAGCTGGTGCGCCTGGCCAAGAAGAAGGGCGTTGCGATCCTCCTGGTCG
GCCACGTCACCAAGGACGGCCAGATCGCCGGCCCGCGCGTCGTCGAGCACCTCGTGGACGCTGTGCTGTCGTTCGAGGGC
GAGCGCGGCTATCCGTTCCGGATCCTGCGCGGCGCCAAGAACCGCTTTGGCGCGACCGACGAGATCGGCGTGTTCGAGAT
GGGCGATGTGGGCCTGCGCGAGGTCAAGAACCCCTCGGCCCTGTTTCTCAACGAGGGCGGCGAGCGCGCCGCCGGCGCGG
CGGTGTTCGCCGGCATCGAGGGCTCGCGCCCCGTGCTCGTGGAATTCCAGGCTCTGGTCGCGCCTTCGGCCTATGGAACG
CCGCGCCGCGCCGTCGTCGGCTGGGACTCTGGACGCCTCGCCATGGTGCTCGCCGTGCTCGAGGCCCGATGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCCGGCGGCCTGCGCATTACCGAACCGGCGGCGGATCTCGCGGCGGCGG
CGGCCCTGGCCTCTTCCGCCCTGGACGTCGCCCTGCCCCAGGACTGCGTCGTGTTCGGCGAACTCAGCCTGTCGGGCGAA
GTCCGCCCGGTCAGTCGGATGGAGACCCGTTTGAAGGAAGCCGCGAAACTGGGGTTTGACCGCGCGCTCGGCCCGCTCGC
CGGCCTGCCGGAAGGCGGCGGCGCCCTGCCCGTGGCGGGCGTGGCGCGGTTGACGGACGCCGTCCGCCGGATCGGCGACG
AAATCTGGACCAGCCTGACGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.02

99.783

0.489
  radA Streptococcus pneumoniae Rx1

45.435

100

0.454
  radA Streptococcus pneumoniae D39

45.435

100

0.454
  radA Streptococcus pneumoniae R6

45.435

100

0.454
  radA Streptococcus pneumoniae TIGR4

45.435

100

0.454
  radA Streptococcus mitis NCTC 12261

45.119

100

0.452
  radA Streptococcus mitis SK321

45.119

100

0.452

Multiple sequence alignment