Detailed information NTG0329164

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: EH163_RS10025
• Genome accession: NZ_CP034115
• Coordinates: 1974720..1975694 (+)
• Length: 324 a.a.
• NCBI ID: WP_058649760.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain CDC121
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1969720..1980694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EH163_RS09990	rpmG	1970200..1970349 (+)	150	WP_001830957.1	50S ribosomal protein L33	-
EH163_RS09995	-	1970532..1971083 (+)	552	WP_001831001.1	5-formyltetrahydrofolate cyclo-ligase	-
EH163_RS10000	-	1971084..1972544 (+)	1461	WP_001832757.1	rhomboid family intramembrane serine protease	-
EH163_RS10005	-	1972528..1972728 (+)	201	WP_001831138.1	YqgQ family protein	-
EH163_RS10010	-	1972728..1973714 (+)	987	WP_001831113.1	ROK family glucokinase	-
EH163_RS10015	-	1973714..1974040 (+)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
EH163_RS10020	-	1974040..1974663 (+)	624	WP_001831016.1	MBL fold metallo-hydrolase	-
EH163_RS10025	comGA	1974720..1975694 (+)	975	WP_058649760.1	competence type IV pilus ATPase ComGA	Machinery gene
EH163_RS10030	comGB	1975666..1976733 (+)	1068	WP_001831131.1	competence type IV pilus assembly protein ComGB	Machinery gene
EH163_RS10035	comGC	1976751..1977068 (+)	318	WP_001831271.1	competence type IV pilus major pilin ComGC	Machinery gene
EH163_RS10040	comGD	1977058..1977495 (+)	438	WP_001831025.1	competence type IV pilus minor pilin ComGD	-
EH163_RS10045	-	1977482..1977775 (+)	294	WP_080035447.1	hypothetical protein	-
EH163_RS10050	-	1977699..1978190 (+)	492	WP_002440043.1	competence type IV pilus minor pilin ComGF	-
EH163_RS10060	-	1978355..1978867 (+)	513	WP_002485736.1	shikimate kinase	-
EH163_RS10065	gcvT	1979085..1980176 (+)	1092	WP_001831107.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37388.48 Da
• Isoelectric Point: 8.6335

>NTDB_id=329164 EH163_RS10025 WP_058649760.1 1974720..1975694(+) (comGA) [Staphylococcus epidermidis strain CDC121]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKADINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=329164 EH163_RS10025 WP_058649760.1 1974720..1975694(+) (comGA) [Staphylococcus epidermidis strain CDC121]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGATATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	69.753	100	0.698
comGA	Staphylococcus aureus N315	69.753	100	0.698