Detailed information NTG0329128

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: EH162_RS09675
• Genome accession: NZ_CP034111
• Coordinates: 1913598..1914572 (+)
• Length: 324 a.a.
• NCBI ID: WP_058649760.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain CDC120
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1908598..1919572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EH162_RS09640	rpmG	1909078..1909227 (+)	150	WP_001830957.1	50S ribosomal protein L33	-
EH162_RS09645	-	1909410..1909961 (+)	552	WP_001831001.1	5-formyltetrahydrofolate cyclo-ligase	-
EH162_RS09650	-	1909962..1911422 (+)	1461	WP_001832757.1	rhomboid family intramembrane serine protease	-
EH162_RS09655	-	1911406..1911606 (+)	201	WP_001831138.1	YqgQ family protein	-
EH162_RS09660	-	1911606..1912592 (+)	987	WP_001831113.1	ROK family glucokinase	-
EH162_RS09665	-	1912592..1912918 (+)	327	WP_124726212.1	MTH1187 family thiamine-binding protein	-
EH162_RS09670	-	1912918..1913541 (+)	624	WP_001831016.1	MBL fold metallo-hydrolase	-
EH162_RS09675	comGA	1913598..1914572 (+)	975	WP_058649760.1	competence type IV pilus ATPase ComGA	Machinery gene
EH162_RS09680	comGB	1914544..1915611 (+)	1068	WP_001831131.1	competence type IV pilus assembly protein ComGB	Machinery gene
EH162_RS09685	comGC	1915629..1915946 (+)	318	WP_001831271.1	competence type IV pilus major pilin ComGC	Machinery gene
EH162_RS09690	comGD	1915936..1916373 (+)	438	WP_001831025.1	competence type IV pilus minor pilin ComGD	-
EH162_RS09695	-	1916360..1916653 (+)	294	WP_080035447.1	hypothetical protein	-
EH162_RS09700	-	1916577..1917068 (+)	492	WP_002440043.1	competence type IV pilus minor pilin ComGF	-
EH162_RS09710	-	1917233..1917745 (+)	513	WP_002485736.1	shikimate kinase	-
EH162_RS09715	gcvT	1917963..1919054 (+)	1092	WP_001831107.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37388.48 Da
• Isoelectric Point: 8.6335

>NTDB_id=329128 EH162_RS09675 WP_058649760.1 1913598..1914572(+) (comGA) [Staphylococcus epidermidis strain CDC120]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKADINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=329128 EH162_RS09675 WP_058649760.1 1913598..1914572(+) (comGA) [Staphylococcus epidermidis strain CDC120]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGATATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	69.753	100	0.698
comGA	Staphylococcus aureus N315	69.753	100	0.698