Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BAMF_RS20550 Genome accession   NC_014551
Coordinates   61201..61431 (+) Length   76 a.a.
NCBI ID   WP_013350764.1    Uniprot ID   A0A9P1JE37
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56201..66431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS20520 (BAMF_0048) ridA 56390..56770 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BAMF_RS20525 (BAMF_0049) spoVG 56966..57259 (+) 294 WP_004264660.1 septation regulator SpoVG -
  BAMF_RS20530 (BAMF_0050) glmU 57450..58820 (+) 1371 WP_013350760.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BAMF_RS20535 (BAMF_0051) - 58842..59795 (+) 954 WP_013350761.1 ribose-phosphate diphosphokinase -
  BAMF_RS20540 (BAMF_0052) - 59880..60488 (+) 609 WP_013350762.1 50S ribosomal protein L25/general stress protein Ctc -
  BAMF_RS20545 (BAMF_0053) pth 60573..61139 (+) 567 WP_013350763.1 aminoacyl-tRNA hydrolase -
  BAMF_RS20550 (BAMF_0054) subA/fin 61201..61431 (+) 231 WP_013350764.1 anti-sigma-F factor Fin family protein Machinery gene
  BAMF_RS20555 (BAMF_0055) mfd 61502..65035 (+) 3534 WP_013350765.1 transcription-repair coupling factor -
  BAMF_RS20560 (BAMF_0056) spoVT 65172..65708 (+) 537 WP_013350766.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8893.91 Da        Isoelectric Point: 5.8002

>NTDB_id=32902 BAMF_RS20550 WP_013350764.1 61201..61431(+) (subA/fin) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MALHYFCRHCGIKVGSLEYTTVPTQSLGFQHLTNEERNDMISYKDNGDLHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=32902 BAMF_RS20550 WP_013350764.1 61201..61431(+) (subA/fin) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGTATTAAGGTAGGGAGCCTGGAATATACGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATCTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGGAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JE37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

84.211

100

0.842

Multiple sequence alignment