Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SaO267_RS09860 Genome accession   NZ_CP034102
Coordinates   1934183..1934602 (-) Length   139 a.a.
NCBI ID   WP_000934796.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O267     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1924724..1944279 1934183..1934602 within 0


Gene organization within MGE regions


Location: 1924724..1944279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO267_RS09805 (SaO267_01806) - 1924724..1924867 (-) 144 WP_000432510.1 gallidermin/nisin family lantibiotic -
  SaO267_RS09820 - 1927266..1927409 (-) 144 WP_000416757.1 gallidermin/nisin family lantibiotic -
  SaO267_RS09825 (SaO267_01808) - 1927652..1928635 (-) 984 WP_000782475.1 leukocidin/hemolysin toxin family protein -
  SaO267_RS09830 (SaO267_01809) lukE 1928637..1929572 (-) 936 Protein_1871 bi-component leukocidin LukED subunit E -
  SaO267_RS09835 - 1930513..1930749 (+) 237 WP_014532652.1 hypothetical protein -
  SaO267_RS09840 (SaO267_01811) - 1930770..1931546 (+) 777 WP_000848320.1 DUF1828 domain-containing protein -
  SaO267_RS09845 (SaO267_01812) - 1931942..1932436 (+) 495 WP_000197444.1 hypothetical protein -
  SaO267_RS09850 (SaO267_01813) - 1932512..1933561 (+) 1050 WP_000146087.1 site-specific integrase -
  SaO267_RS09855 (SaO267_01814) - 1933856..1934169 (-) 314 Protein_1876 putative HNHc nuclease -
  SaO267_RS09860 (SaO267_01815) ssbA 1934183..1934602 (-) 420 WP_000934796.1 single-stranded DNA-binding protein Machinery gene
  SaO267_RS09865 (SaO267_01816) - 1934602..1935225 (-) 624 WP_000139727.1 DUF1071 domain-containing protein -
  SaO267_RS09870 (SaO267_01817) - 1935218..1935439 (-) 222 WP_000815403.1 DUF2483 family protein -
  SaO267_RS09875 (SaO267_01818) - 1935449..1935709 (-) 261 WP_000291499.1 DUF1108 family protein -
  SaO267_RS09880 (SaO267_01819) - 1935714..1936016 (-) 303 WP_126116953.1 DUF2482 family protein -
  SaO267_RS09885 - 1936119..1936280 (-) 162 WP_000048132.1 DUF1270 family protein -
  SaO267_RS09890 (SaO267_01820) - 1936295..1936510 (-) 216 WP_001093507.1 DUF771 domain-containing protein -
  SaO267_RS09895 (SaO267_01821) - 1936526..1937281 (-) 756 WP_072529172.1 phage antirepressor KilAC domain-containing protein -
  SaO267_RS09900 (SaO267_01822) - 1937338..1937583 (+) 246 WP_000122243.1 hypothetical protein -
  SaO267_RS09905 (SaO267_01823) - 1937551..1937754 (-) 204 Protein_1886 hypothetical protein -
  SaO267_RS09910 (SaO267_01824) - 1937813..1938295 (+) 483 WP_126117036.1 hypothetical protein -
  SaO267_RS15035 - 1938346..1938513 (-) 168 WP_015977683.1 hypothetical protein -
  SaO267_RS09915 (SaO267_01825) - 1938529..1938744 (-) 216 WP_000957143.1 hypothetical protein -
  SaO267_RS09920 (SaO267_01826) - 1938940..1939641 (+) 702 WP_076692361.1 XRE family transcriptional regulator -
  SaO267_RS09925 (SaO267_01827) - 1939659..1940384 (+) 726 WP_126117037.1 PH domain-containing protein -
  SaO267_RS09930 (SaO267_01828) - 1940416..1940937 (+) 522 WP_126117038.1 hypothetical protein -
  SaO267_RS15235 - 1940930..1941307 (+) 378 WP_224089440.1 hypothetical protein -
  SaO267_RS09940 (SaO267_01830) - 1941361..1942425 (+) 1065 WP_126117039.1 site-specific integrase -
  SaO267_RS09985 (SaO267_01839) - 1943725..1944279 (-) 555 WP_000132894.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15606.24 Da        Isoelectric Point: 7.0171

>NTDB_id=329018 SaO267_RS09860 WP_000934796.1 1934183..1934602(-) (ssbA) [Staphylococcus aureus strain O267]
MLNRVVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=329018 SaO267_RS09860 WP_000934796.1 1934183..1934602(-) (ssbA) [Staphylococcus aureus strain O267]
ATGTTAAACAGAGTAGTTTTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACACCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

80.374

76.978

0.619
  ssb Latilactobacillus sakei subsp. sakei 23K

53.947

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

79.137

0.468
  ssbB/cilA Streptococcus mitis SK321

40.288

100

0.403
  ssbA Streptococcus mutans UA159

45.378

85.612

0.388
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.057

76.259

0.374

Multiple sequence alignment