Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOZ66_RS01990 Genome accession   NZ_CP041945
Coordinates   430862..432235 (+) Length   457 a.a.
NCBI ID   WP_023127782.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST773     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425862..437235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOZ66_RS01970 (FOZ66_02045) - 426699..427265 (-) 567 WP_003084491.1 hypothetical protein -
  FOZ66_RS01975 (FOZ66_02050) rsmD 427268..427864 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOZ66_RS01980 (FOZ66_02055) - 427864..429351 (-) 1488 WP_023095110.1 M16 family metallopeptidase -
  FOZ66_RS01985 (FOZ66_02060) - 429344..430741 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  FOZ66_RS01990 (FOZ66_02065) pilA 430862..432235 (+) 1374 WP_023127782.1 signal recognition particle-docking protein FtsY Machinery gene
  FOZ66_RS01995 (FOZ66_02070) ftsE 432232..432903 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  FOZ66_RS02000 (FOZ66_02075) ftsX 432903..433910 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  FOZ66_RS02005 (FOZ66_02080) rpoH 434024..434878 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  FOZ66_RS02010 (FOZ66_02085) - 434943..435548 (+) 606 WP_003084511.1 hypothetical protein -
  FOZ66_RS02015 (FOZ66_02090) mtgA 435553..436284 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FOZ66_RS02020 (FOZ66_02095) - 436321..436698 (+) 378 WP_021263126.1 DUF423 domain-containing protein -
  FOZ66_RS02025 (FOZ66_02100) thiS 436801..437001 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48618.05 Da        Isoelectric Point: 4.5033

>NTDB_id=328993 FOZ66_RS01990 WP_023127782.1 430862..432235(+) (pilA) [Pseudomonas aeruginosa strain ST773]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLS
KTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVE
QPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSAS
VIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTG
LALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=328993 FOZ66_RS01990 WP_023127782.1 430862..432235(+) (pilA) [Pseudomonas aeruginosa strain ST773]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTG
CGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCC
AAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGA
CATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGG
CGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAG
CAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCAC
CATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCG
CCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCG
GTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATAC
CAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCC
TGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGC
CTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCG
CTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGC
GGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(167-232)

SRP54-type protein, GTPase domain (SRP54)

(252-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.697

96.061

0.449