Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FPV29_RS16915 Genome accession   NZ_CP041919
Coordinates   3464681..3465286 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Ec40743     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3459681..3470286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV29_RS16895 (FPV29_16895) aes 3459822..3460781 (+) 960 WP_000801846.1 acetyl esterase -
  FPV29_RS16900 (FPV29_16900) hemH 3460778..3461740 (-) 963 WP_001250088.1 ferrochelatase -
  FPV29_RS16905 (FPV29_16905) adk 3461872..3462516 (-) 645 WP_001220233.1 adenylate kinase -
  FPV29_RS16910 (FPV29_16910) htpG 3462697..3464571 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  FPV29_RS16915 (FPV29_16915) recR 3464681..3465286 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FPV29_RS16920 (FPV29_16920) ybaB 3465286..3465615 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FPV29_RS16925 (FPV29_16925) dnaX 3465668..3467599 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  FPV29_RS16930 (FPV29_16930) apt 3467728..3468279 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FPV29_RS16935 (FPV29_16935) ybaN 3468432..3468809 (-) 378 WP_001188905.1 DUF454 family protein -
  FPV29_RS16940 (FPV29_16940) priC 3468879..3469406 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  FPV29_RS16945 (FPV29_16945) rsmS 3469420..3469581 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=328963 FPV29_RS16915 WP_001195025.1 3464681..3465286(-) (recR) [Escherichia coli strain Ec40743]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=328963 FPV29_RS16915 WP_001195025.1 3464681..3465286(-) (recR) [Escherichia coli strain Ec40743]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443