Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FPV29_RS05435 Genome accession   NZ_CP041919
Coordinates   1109261..1109776 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain Ec40743     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104261..1114776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV29_RS05390 (FPV29_05390) csrA 1104713..1104898 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FPV29_RS05420 (FPV29_05420) yqaB 1106491..1107057 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FPV29_RS05425 (FPV29_05425) yqaA 1107054..1107482 (+) 429 WP_001287457.1 YqaA family protein -
  FPV29_RS05430 (FPV29_05430) gshA 1107555..1109111 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  FPV29_RS05435 (FPV29_05435) luxS 1109261..1109776 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  FPV29_RS05440 (FPV29_05440) emrB 1109840..1111378 (-) 1539 WP_144114330.1 multidrug efflux MFS transporter permease subunit EmrB -
  FPV29_RS05445 (FPV29_05445) emrA 1111395..1112567 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FPV29_RS05450 (FPV29_05450) emrR 1112694..1113224 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FPV29_RS05455 (FPV29_05455) ygaH 1113315..1113650 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FPV29_RS05460 (FPV29_05460) ygaZ 1113640..1114377 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=328934 FPV29_RS05435 WP_001130210.1 1109261..1109776(+) (luxS) [Escherichia coli strain Ec40743]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=328934 FPV29_RS05435 WP_001130210.1 1109261..1109776(+) (luxS) [Escherichia coli strain Ec40743]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment