Detailed information NTG0328931

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FPV29_RS05130
• Genome accession: NZ_CP041919
• Coordinates: 1052001..1052993 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081589.1
• Uniprot ID: -
• Organism: Escherichia coli strain Ec40743
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1047001..1057993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FPV29_RS05100 (FPV29_05100)	ispD	1047062..1047772 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FPV29_RS05105 (FPV29_05105)	ispF	1047772..1048251 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FPV29_RS05110 (FPV29_05110)	truD	1048248..1049297 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FPV29_RS05115 (FPV29_05115)	surE	1049278..1050039 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FPV29_RS05120 (FPV29_05120)	pcm	1050033..1050659 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FPV29_RS05125 (FPV29_05125)	nlpD	1050844..1051938 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FPV29_RS05130 (FPV29_05130)	rpoS	1052001..1052993 (+)	993	WP_000081589.1	RNA polymerase sigma factor RpoS	Regulator
FPV29_RS05135 (FPV29_05135)	-	1053114..1053521 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
FPV29_RS05140 (FPV29_05140)	-	1053668..1054261 (+)	594	WP_000767733.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FPV29_RS05145 (FPV29_05145)	-	1054261..1055688 (+)	1428	WP_000863214.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FPV29_RS05150 (FPV29_05150)	-	1055699..1055935 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FPV29_RS05155 (FPV29_05155)	ygbN	1055975..1057339 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38002.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=328931 FPV29_RS05130 WP_000081589.1 1052001..1052993(+) (rpoS) [Escherichia coli strain Ec40743]
MSQNTLKVHDLNEDAEFDENGVEVFDEKTLVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=328931 FPV29_RS05130 WP_000081589.1 1052001..1052993(+) (rpoS) [Escherichia coli strain Ec40743]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGACCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	71.903	100	0.721