Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOY97_RS02065 Genome accession   NZ_CP041774
Coordinates   431626..433017 (+) Length   463 a.a.
NCBI ID   WP_023105737.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 60503     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426626..438017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY97_RS02045 (FOY97_02045) - 427463..428029 (-) 567 WP_003084491.1 hypothetical protein -
  FOY97_RS02050 (FOY97_02050) rsmD 428032..428628 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOY97_RS02055 (FOY97_02055) - 428628..430115 (-) 1488 WP_023095110.1 pitrilysin family protein -
  FOY97_RS02060 (FOY97_02060) - 430108..431505 (-) 1398 WP_003084498.1 pitrilysin family protein -
  FOY97_RS02065 (FOY97_02065) pilA 431626..433017 (+) 1392 WP_023105737.1 signal recognition particle-docking protein FtsY Machinery gene
  FOY97_RS02070 (FOY97_02070) ftsE 433014..433685 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  FOY97_RS02075 (FOY97_02075) ftsX 433685..434692 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  FOY97_RS02080 (FOY97_02080) rpoH 434806..435660 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  FOY97_RS02085 (FOY97_02085) - 435725..436330 (+) 606 WP_003084511.1 hypothetical protein -
  FOY97_RS02090 (FOY97_02090) mtgA 436335..437066 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FOY97_RS02095 (FOY97_02095) - 437103..437480 (+) 378 WP_021263126.1 DUF423 domain-containing protein -
  FOY97_RS02100 (FOY97_02100) thiS 437583..437783 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49296.75 Da        Isoelectric Point: 4.4390

>NTDB_id=328813 FOY97_RS02065 WP_023105737.1 431626..433017(+) (pilA) [Pseudomonas aeruginosa strain 60503]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFAR
LRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELAS
LLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHT
GADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNL
AVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=328813 FOY97_RS02065 WP_023105737.1 431626..433017(+) (pilA) [Pseudomonas aeruginosa strain 60503]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGC
CCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGC
CTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGA
CGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGA
ACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGC
CTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGG
CGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCG
ACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACC
GGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATAC
CGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGA
CGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTC
GCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCA
GTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCC
AGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(173-238)

SRP54-type protein, GTPase domain (SRP54)

(258-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.354

71.922

0.391

Multiple sequence alignment