Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MCCL_RS05265 Genome accession   NC_011999
Coordinates   1046123..1046632 (+) Length   169 a.a.
NCBI ID   WP_012656859.1    Uniprot ID   B9EBP8
Organism   Macrococcoides caseolyticum JCSC5402     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1041123..1051632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCL_RS05230 - 1041604..1041795 (+) 192 WP_041635945.1 hypothetical protein -
  MCCL_RS12505 - 1041785..1041916 (+) 132 WP_269446092.1 hypothetical protein -
  MCCL_RS05235 (MCCL_0946) - 1041997..1042938 (+) 942 WP_012656853.1 YqaJ viral recombinase family protein -
  MCCL_RS05240 (MCCL_0947) recT 1042944..1043774 (+) 831 WP_012656854.1 recombination protein RecT -
  MCCL_RS05245 (MCCL_0948) - 1043806..1044396 (+) 591 WP_012656855.1 phage replisome organizer N-terminal domain-containing protein -
  MCCL_RS05250 (MCCL_0949) - 1044368..1044697 (+) 330 WP_041635947.1 DnaD domain-containing protein -
  MCCL_RS05255 (MCCL_0950) - 1044675..1045460 (+) 786 WP_041635949.1 ATP-binding protein -
  MCCL_RS05260 (MCCL_0951) - 1045486..1045809 (+) 324 WP_041635950.1 hypothetical protein -
  MCCL_RS12220 - 1045802..1045978 (+) 177 WP_158298073.1 hypothetical protein -
  MCCL_RS12225 - 1045950..1046126 (+) 177 WP_158298074.1 hypothetical protein -
  MCCL_RS05265 (MCCL_0952) ssbA 1046123..1046632 (+) 510 WP_012656859.1 single-stranded DNA-binding protein Machinery gene
  MCCL_RS05270 - 1046659..1046937 (+) 279 WP_041635952.1 hypothetical protein -
  MCCL_RS05275 - 1046934..1047113 (+) 180 WP_041635954.1 hypothetical protein -
  MCCL_RS05280 - 1047363..1047596 (+) 234 WP_041635956.1 phage protein -
  MCCL_RS11685 (MCCL_0953) - 1047599..1048111 (+) 513 WP_012656860.1 HNH endonuclease signature motif containing protein -
  MCCL_RS05290 (MCCL_0954) - 1048123..1048629 (+) 507 WP_041635957.1 hypothetical protein -
  MCCL_RS12230 - 1048642..1048815 (+) 174 WP_157820998.1 hypothetical protein -
  MCCL_RS05295 - 1048818..1049039 (+) 222 WP_041635959.1 hypothetical protein -
  MCCL_RS05300 - 1049052..1049294 (+) 243 WP_041635960.1 hypothetical protein -
  MCCL_RS05305 - 1049322..1049513 (+) 192 WP_041635961.1 hypothetical protein -
  MCCL_RS05310 - 1049515..1049739 (+) 225 WP_041635962.1 hypothetical protein -
  MCCL_RS05315 - 1049770..1049994 (+) 225 WP_041635963.1 hypothetical protein -
  MCCL_RS05320 - 1050063..1050257 (+) 195 WP_041635965.1 hypothetical protein -
  MCCL_RS05325 - 1050279..1050497 (+) 219 WP_041635966.1 hypothetical protein -
  MCCL_RS05330 - 1050519..1050698 (+) 180 WP_041635967.1 hypothetical protein -
  MCCL_RS12235 - 1050719..1050889 (+) 171 WP_158298075.1 hypothetical protein -
  MCCL_RS05335 (MCCL_0955) - 1051011..1051373 (+) 363 WP_041635968.1 hypothetical protein -
  MCCL_RS12240 - 1051370..1051540 (+) 171 WP_157820996.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18969.55 Da        Isoelectric Point: 5.1511

>NTDB_id=32880 MCCL_RS05265 WP_012656859.1 1046123..1046632(+) (ssbA) [Macrococcoides caseolyticum JCSC5402]
MINRVVLTGRLTKDPEFRVTTSGVSVATFTLAVNRMFSNDQGEKQADFINCVTFRKQAENVNNFLSKASLVGVDGRLQSR
SYDNQQGQRVFVTEVICDSVQFLEPKNSQNNANNNAQQTNYNQTNNNNQNNQNVNRGQNNTNNGYSQQHENPFANSSGPI
DIQDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=32880 MCCL_RS05265 WP_012656859.1 1046123..1046632(+) (ssbA) [Macrococcoides caseolyticum JCSC5402]
ATGATTAACAGAGTAGTACTTACGGGTCGATTAACAAAAGATCCAGAATTCAGAGTAACAACATCAGGTGTTTCAGTCGC
AACATTCACATTAGCAGTAAATCGCATGTTTTCGAATGACCAGGGAGAAAAACAGGCAGATTTTATTAACTGTGTGACTT
TCAGAAAACAAGCAGAAAATGTTAACAACTTCTTAAGTAAAGCCAGTTTAGTCGGTGTTGACGGAAGATTGCAATCACGC
AGCTACGATAATCAACAAGGACAGCGTGTATTCGTTACAGAAGTGATTTGCGACAGTGTTCAGTTCCTTGAACCAAAGAA
TAGTCAAAATAACGCAAATAATAATGCACAACAAACGAATTACAATCAGACGAACAACAATAACCAAAACAACCAAAACG
TCAATAGAGGGCAAAATAACACAAATAACGGATACTCGCAACAGCATGAAAATCCATTTGCTAATTCATCAGGCCCTATC
GATATCCAGGATGATGATTTGCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9EBP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.639
  ssb Latilactobacillus sakei subsp. sakei 23K

52.047

100

0.527
  ssb Glaesserella parasuis strain SC1401

34.637

100

0.367

Multiple sequence alignment