Detailed information NTG0328779

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOY95_RS19130
• Genome accession: NZ_CP041773
• Coordinates: 3981649..3982653 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 519119
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3976649..3987653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOY95_RS19100 (FOY95_19100)	fghA	3976741..3977592 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
FOY95_RS19105 (FOY95_19105)	ispF	3977663..3978136 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FOY95_RS19110 (FOY95_19110)	truD	3978133..3979200 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
FOY95_RS19115 (FOY95_19115)	surE	3979188..3979937 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
FOY95_RS19120 (FOY95_19120)	-	3979970..3980605 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FOY95_RS19125 (FOY95_19125)	-	3980651..3981544 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
FOY95_RS19130 (FOY95_19130)	rpoS	3981649..3982653 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
FOY95_RS19135 (FOY95_19135)	fdxA	3983079..3983402 (-)	324	WP_003119354.1	ferredoxin FdxA	-
FOY95_RS19140 (FOY95_19140)	mutS	3983469..3986036 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
FOY95_RS19150 (FOY95_19150)	-	3986162..3987169 (-)	1008	WP_003117491.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=328779 FOY95_RS19130 WP_003113871.1 3981649..3982653(+) (rpoS) [Pseudomonas aeruginosa strain 519119]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=328779 FOY95_RS19130 WP_003113871.1 3981649..3982653(+) (rpoS) [Pseudomonas aeruginosa strain 519119]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653