Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EHU52_RS05510 Genome accession   NZ_CP034071
Coordinates   1125217..1125627 (-) Length   136 a.a.
NCBI ID   WP_124733403.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120217..1130627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS05465 - 1120596..1121681 (-) 1086 WP_124733399.1 hypothetical protein -
  EHU52_RS05470 - 1121671..1122456 (-) 786 WP_124733400.1 hypothetical protein -
  EHU52_RS05475 - 1122456..1122837 (-) 382 Protein_1040 DUF1294 domain-containing protein -
  EHU52_RS07895 - 1123154..1123579 (-) 426 WP_240623580.1 hypothetical protein -
  EHU52_RS05495 - 1123830..1124390 (-) 561 WP_124733401.1 hypothetical protein -
  EHU52_RS05500 - 1124374..1124712 (-) 339 WP_124733402.1 hypothetical protein -
  EHU52_RS05510 dprB 1125217..1125627 (-) 411 WP_124733403.1 Holliday junction resolvase RuvX Machinery gene
  EHU52_RS05515 dprA 1125624..1126424 (-) 801 WP_124733404.1 DNA-processing protein DprA Machinery gene
  EHU52_RS05520 minE 1126436..1126669 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  EHU52_RS05525 minD 1126666..1127472 (-) 807 WP_001019043.1 septum site-determining protein MinD -
  EHU52_RS05530 ilvC 1127496..1128488 (-) 993 WP_124733405.1 ketol-acid reductoisomerase -
  EHU52_RS05540 - 1128737..1129519 (+) 783 WP_124733406.1 NAD+ synthase -
  EHU52_RS05545 - 1129516..1130454 (+) 939 WP_124733407.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15509.12 Da        Isoelectric Point: 9.4515

>NTDB_id=328700 EHU52_RS05510 WP_124733403.1 1125217..1125627(-) (dprB) [Helicobacter pylori strain Hpbs1]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKLAI

Nucleotide


Download         Length: 411 bp        

>NTDB_id=328700 EHU52_RS05510 WP_124733403.1 1125217..1125627(-) (dprB) [Helicobacter pylori strain Hpbs1]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAAAGC
TTGCGATTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

97.059

0.934

Multiple sequence alignment