Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   EHU52_RS00015 Genome accession   NZ_CP034071
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_124732730.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS00005 dnaA 1..1368 (+) 1368 WP_124732728.1 chromosomal replication initiator protein DnaA -
  EHU52_RS00015 comH 1589..3028 (+) 1440 WP_124732730.1 competence protein Machinery gene
  EHU52_RS00025 - 3198..3950 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  EHU52_RS00030 - 3947..4582 (-) 636 WP_000668030.1 outer membrane protein -
  EHU52_RS00035 - 4586..4939 (-) 354 WP_000837005.1 hypothetical protein -
  EHU52_RS00040 recG 5021..6886 (+) 1866 WP_124732731.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 55029.21 Da        Isoelectric Point: 8.2056

>NTDB_id=328688 EHU52_RS00015 WP_124732730.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpbs1]
MKKTLYLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPIQKPQNKPTSSQQPLQNFPYLESKLGSKSPKNSLLQPL
ATPNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNANINEHNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESQYQITSQLVKAIYERPKQDDQTEPTFYETSELAYSSTRKSEVKQNEL
KLDNKFMEFVEVYERHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=328688 EHU52_RS00015 WP_124732730.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpbs1]
ATGAAAAAAACTCTTTATCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCACACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAACCTCTTCAAAACTTTCCTTACCTAGAGTCCAAACTAGGCTCTAAAAGCCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCTCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTAATATTA
ATGAACACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCATGGGAAAGTCAGTATCAAATCACTTCTCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTCAAGCAAAACGAATTA
AAATTAGATAACAAATTCATGGAATTTGTGGAAGTGTATGAGAGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAGTGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

90.605

100

0.906

Multiple sequence alignment